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Plant Science

  • Comprehensive evolutionary analysis and nomenclature of plant G3BPs
    Open Access
    Comprehensive evolutionary analysis and nomenclature of plant G3BPs

    Aala A Abulfaraj, Hajime Ohyanagi, Kosuke Goto, Katsuhiko Mineta, Takashi Gojobori, Heribert Hirt, Naganand Rayapuram

    Aala A Abulfaraj ... Naganand Rayapuram

    Published 26 May 2022

    A thorough phylogenetic analysis of eukaryotic G3BPs (Rasputins) with a focus on plant G3BP proteins, classification into two subfamilies and a proposed systematic nomenclature.

  • The value of genotype-specific reference for transcriptome analyses in barley
    Open Access
    The value of genotype-specific reference for transcriptome analyses in barley

    Wenbin Guo, Max Coulter, Robbie Waugh, Runxuan Zhang

    Wenbin Guo ... Runxuan Zhang

    Published 22 April 2022

    We demonstrate in this study that using a common reference genome may lead to loss of genotype-specific information in the assembled Reference Transcript Dataset (RTD) and the generation of erroneous, incomplete, or misleading transcriptomics analysis results in barley.

  • The DREAM complex represses growth in response to DNA damage in <em>Arabidopsis</em>
    Open Access
    The DREAM complex represses growth in response to DNA damage in Arabidopsis

    Lucas Lang, Aladár Pettkó-Szandtner, Hasibe Tunçay Elbaşı, Hirotomo Takatsuka, Yuji Nomoto, Ahmad Zaki, Stefan Dorokhov, Geert De Jaeger, Dominique Eeckhout, Masaki Ito, Zoltán Magyar, László Bögre, Maren Heese, Arp Schnittger

    Lucas Lang ... Arp Schnittger

    Published 28 September 2021

    This work presents composition, associated proteins, and topological aspects of the DREAM complex in plants and links to the DNA damage response by protein interaction data and mutant analysis.

  • The structure and flexibility analysis of the <em>Arabidopsis</em> synaptotagmin 1 reveal the basis of its regulation at membrane contact sites
    Open Access
    The structure and flexibility analysis of the Arabidopsis synaptotagmin 1 reveal the basis of its regulation at membrane contact sites

    Juan L Benavente, Dritan Siliqi, Lourdes Infantes, Laura Lagartera, Alberto Mills, Federico Gago, Noemí Ruiz-López, Miguel A Botella, María J Sánchez-Barrena, Armando Albert

    Juan L Benavente ... Armando Albert

    Published 18 August 2021

    Plant SYT1 transports lipids between endoplasmic reticulum and plasma membrane in response to stress. The protein flexibility and lipid-binding specificity determine SYT1 function at molecular level.

  • Polycomb mutant partially suppresses DNA hypomethylation–associated phenotypes in Arabidopsis
    Open Access
    Polycomb mutant partially suppresses DNA hypomethylation–associated phenotypes in Arabidopsis

    Martin Rougée, Leandro Quadrana, Jérôme Zervudacki, Valentin Hure, Vincent Colot, Lionel Navarro, Angélique Deleris

    Martin Rougée ... Angélique Deleris

    Published 21 December 2020

    A mutation in Arabidopsis polycomb repressive complex 2 partially suppresses the transposon activity observed in a DNA methylation mutant, challenging expectations.

  • The bacterial quorum sensing signal DSF hijacks <em>Arabidopsis thaliana</em> sterol biosynthesis to suppress plant innate immunity
    Open Access
    The bacterial quorum sensing signal DSF hijacks Arabidopsis thaliana sterol biosynthesis to suppress plant innate immunity

    Tuan Minh Tran, Zhiming Ma, Alexander Triebl, Sangeeta Nath, Yingying Cheng, Ben-Qiang Gong, Xiao Han, Junqi Wang, Jian-Feng Li, Markus R Wenk, Federico Torta, Satyajit Mayor, Liang Yang, Yansong Miao

    Tuan Minh Tran ... Yansong Miao

    Published 11 August 2020

    This study highlights that DSF, the quorum sensing signal produced by bacterial phytopathogens, is able to directly modulate plant plasma membrane dynamics by interfering with host lipid profile and thereby, suppress plant immunity responses.

  • CYP20-3 deglutathionylates 2-CysPRX A and suppresses peroxide detoxification during heat stress
    Open Access
    CYP20-3 deglutathionylates 2-CysPRX A and suppresses peroxide detoxification during heat stress

    Wenshan Liu, Izailda Barbosa dos Santos, Anna Moye, Sang-Wook Park

    Wenshan Liu ... Sang-Wook Park

    Published 30 July 2020

    Posttranslational modification by a reduced glutathione determines distinctive quaternary structures and functions between two 2-cysteine peroxiredoxin A and B in the chloroplasts.

  • Genetic and molecular characterization of multicomponent resistance of <em>Pseudomonas</em> against allicin
    Open Access
    Genetic and molecular characterization of multicomponent resistance of Pseudomonas against allicin

    Jan Borlinghaus, Anthony Bolger, Christina Schier, Alexander Vogel, Björn Usadel, Martin CH Gruhlke, Alan J Slusarenko

    Jan Borlinghaus ... Alan J Slusarenko

    Published 31 March 2020

    A pseudomonad isolated from garlic has multiple copies of genes on three genomic islands that confer resistance to allicin, a secondary plant product and defense substance that causes disulfide stress.

  • Metabolome-based prediction of yield heterosis contributes to the breeding of elite rice
    Open Access
    Metabolome-based prediction of yield heterosis contributes to the breeding of elite rice

    Zhiwu Dan, Yunping Chen, Weibo Zhao, Qiong Wang, Wenchao Huang

    Zhiwu Dan ... Wenchao Huang

    Published 13 December 2019

    Metabolite profiles obtained from parental seedlings can predict yield heterosis of rice hybrids with correctly dissected population structure across different growth conditions.

  • Unfolded protein-independent IRE1 activation contributes to multifaceted developmental processes in Arabidopsis
    Open Access
    Unfolded protein-independent IRE1 activation contributes to multifaceted developmental processes in Arabidopsis

    Kei-ichiro Mishiba, Yuji Iwata, Tomofumi Mochizuki, Atsushi Matsumura, Nanami Nishioka, Rikako Hirata, Nozomu Koizumi

    Kei-ichiro Mishiba ... Nozomu Koizumi

    Published 10 October 2019

    The Arabidopsis unfolded protein response transducer IRE1 contributes to male gametophyte development using an alternative activation mechanism bypassing the unfolded protein-sensing domain.

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