Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1
- Karel Kubicek1,3,
- Hana Cerna1,3,
- Peter Holub1,
- Josef Pasulka1,
- Dominika Hrossova1,
- Frank Loehr2,
- Ctirad Hofr1,
- Stepanka Vanacova1,4 and
- Richard Stefl1,4
- 1CEITEC-Central European Institute of Technology, Masaryk University, Brno, 62500, Czech Republic;
- 2Institute of Biophysical Chemistry, Center for Biomolecular Magnetic Resonance, Goethe-University Frankfurt, 60438 Frankfurt am Main, Germany
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↵3 These authors contributed equally to this work.
Abstract
Recruitment of appropriate RNA processing factors to the site of transcription is controlled by post-translational modifications of the C-terminal domain (CTD) of RNA polymerase II (RNAP II). Here, we report the solution structure of the Ser5 phosphorylated (pSer5) CTD bound to Nrd1. The structure reveals a direct recognition of pSer5 by Nrd1 that requires the cis conformation of the upstream pSer5–Pro6 peptidyl-prolyl bond of the CTD. Mutations at the complex interface diminish binding affinity and impair processing or degradation of noncoding RNAs. These findings underpin the interplay between covalent and noncovalent changes in the CTD structure that constitute the CTD code.
Keywords
- RNA polymerase II
- CTD code
- phosphorylation
- proline isomerization
- RNA processing and degradation
- NMR spectroscopy
- structure
Footnotes
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↵4 Corresponding author
E-mail richard.stefl{at}ceitec.muni.cz
E-mail vanacova{at}chemi.muni.cz
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Supplemental material is available for this article.
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Article published online ahead of print. Article and publication date are online at http://www.genesdev.org/cgi/doi/10.1101/gad.192781.112.
- Received March 26, 2012.
- Accepted July 12, 2012.
- Copyright © 2012 by Cold Spring Harbor Laboratory Press