[HTML][HTML] Diagnosis of bloodstream infections: an evolution of technologies towards accurate and rapid identification and antibiotic susceptibility testing
Bloodstream infections (BSI) are a leading cause of death worldwide. The lack of timely and
reliable diagnostic practices is an ongoing issue for managing BSI. The current gold …
reliable diagnostic practices is an ongoing issue for managing BSI. The current gold …
[PDF][PDF] PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments
As chromatin accessibility data from ATAC-seq experiments continues to expand, there is
continuing need for standardized analysis pipelines. Here, we present PEPATAC, an ATAC …
continuing need for standardized analysis pipelines. Here, we present PEPATAC, an ATAC …
[HTML][HTML] Integrative profiling of gene expression and chromatin accessibility elucidates specific transcriptional networks in porcine neutrophils
J Herrera-Uribe, KS Lim, KA Byrne, L Daharsh… - Frontiers in …, 2023 - frontiersin.org
Neutrophils are vital components of the immune system for limiting the invasion and
proliferation of pathogens in the body. Surprisingly, the functional annotation of porcine …
proliferation of pathogens in the body. Surprisingly, the functional annotation of porcine …
[HTML][HTML] Integrating chromatin accessibility states in the design of targeted sequencing panels for liquid biopsy
Dying tumor cells shed DNA fragments into the circulation that are known as circulating
tumor DNA (ctDNA). Liquid biopsy tests aim to detect cancer using known markers, including …
tumor DNA (ctDNA). Liquid biopsy tests aim to detect cancer using known markers, including …
Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data
Abstract Assay for Transposase-Accessible Chromatin sequencing (ATAC-Seq) is a widely
used technique to explore gene regulatory mechanisms. For most ATAC-Seq data from …
used technique to explore gene regulatory mechanisms. For most ATAC-Seq data from …
Dissecting the Diverse Phenotypes and Pathological Impacts of Neutrophils in Colitis-to-CRC Progression
TM Bui - 2022 - search.proquest.com
Tissue-infiltrating neutrophils (polymorphonuclear neutrophils [PMNs]) are a prominent
feature of inflammatory bowel disease (IBD) and colorectal cancer (CRC), where these …
feature of inflammatory bowel disease (IBD) and colorectal cancer (CRC), where these …