We present the results for CAPRI Round 50, the fourth joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of twelve targets, including six dimers, …

A new method called Pepsi-SAXS is presented that calculates small-angle X-ray scattering
profiles from atomistic models. The method is based on the multipole expansion scheme and …

We present a new conceptually simple and computationally efficient method for nonlinear
normal-mode analysis called NOLB. It relies on the rotations-translations of blocks (RTB) …

Many proteins contain multiple folded domains separated by flexible linkers, and the ability
to describe the structure and conformational heterogeneity of such flexible systems pushes …

We present the results for CAPRI Round 30, the first joint CASP‐CAPRI experiment, which
brought together experts from the protein structure prediction and protein–protein docking …

INTRODUCTION Microorganisms obtain most of the information about their environments
through membrane-associated signaling systems. One of the most abundant classes of …

We present the results for CAPRI Round 46, the third joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of 20 targets including 14 homo‐oligomers …

Motivation The computational prediction of a protein structure from its sequence generally
relies on a method to assess the quality of protein models. Most assessment methods rank …

Motivation Protein model quality assessment (QA) is a crucial and yet open problem in structural
bioinformatics. The current best methods for single-model QA typically combine results …

Community‐wide blind prediction experiments such as CAPRI and CASP provide an objective
measure of the current state of predictive methodology. Here we describe a community‐…