User profiles for Peter Stadler

Peter F Stadler

Professor of Bioinformatics, Univ. Leipzig
Verified email at bioinf.uni-leipzig.de
Cited by 78833

MITOS: improved de novo metazoan mitochondrial genome annotation

…, G Fritzsch, J Pütz, M Middendorf, PF Stadler - Molecular phylogenetics …, 2013 - Elsevier
About 2000 completely sequenced mitochondrial genomes are available from the NCBI
RefSeq data base together with manually curated annotations of their protein-coding genes, …

[HTML][HTML] RNAalifold: improved consensus structure prediction for RNA alignments

…, IL Hofacker, S Will, AR Gruber, PF Stadler - BMC …, 2008 - Springer
Background The prediction of a consensus structure for a set of related RNAs is an important
first step for subsequent analyses. RNAalifold, which computes the minimum energy …

[HTML][HTML] ViennaRNA Package 2.0

…, H Tafer, C Flamm, PF Stadler… - Algorithms for molecular …, 2011 - Springer
Background Secondary structure forms an important intermediate level of description of nucleic
acids that encapsulates the dominating part of the folding energy, is often well conserved …

[PDF][PDF] Fast folding and comparison of RNA secondary structures

IL Hofacker, W Fontana, PF Stadler… - Monatshefte fur …, 1994 - academia.edu
Computer codes for computation and comparison of RNA secondary structures, the Vienna
RNA paCKage, are presented, that are based on dynamic programming algorithms and aim …

From sequences to shapes and back: a case study in RNA secondary structures

P Schuster, W Fontana, PF Stadler… - Proceedings of the …, 1994 - royalsocietypublishing.org
RNA folding is viewed here as a map assigning secondary structures to sequences. At fixed
chain length the number of sequences far exceeds the number of structures. Frequencies of …

RNA maps reveal new RNA classes and a possible function for pervasive transcription

…, DA Nix, R Duttagupta, AT Willingham, PF Stadler… - Science, 2007 - science.org
Significant fractions of eukaryotic genomes give rise to RNA, much of which is unannotated
and has reduced protein-coding potential. The genomic origins and the associations of …

Comparative genomics reveals insights into avian genome evolution and adaptation

…, EC Holmes, PP Gardner, TE Steeves, PF Stadler… - Science, 2014 - science.org
Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across
many research fields. We explored bird macroevolution using full genomes from 48 avian …

[HTML][HTML] Analyses of pig genomes provide insight into porcine demography and evolution

…, S Searle, B Servin, BR Southey, G Sperber, P Stadler… - Nature, 2012 - nature.com
For 10,000 years pigs and humans have shared a close and complex relationship. From
domestication to modern breeding practices, humans have shaped the genomes of domestic …

The primary transcriptome of the major human pathogen Helicobacter pylori

…, K Reiche, J Hackermüller, R Reinhardt, PF Stadler… - Nature, 2010 - nature.com
Genome sequencing of Helicobacter pylori has revealed the potential proteins and genetic
diversity of this prevalent human pathogen, yet little is known about its transcriptional …

[HTML][HTML] Proteinortho: Detection of (Co-)orthologs in large-scale analysis

M Lechner, S Findeiß, L Steiner, M Marz, PF Stadler… - BMC …, 2011 - Springer
Background Orthology analysis is an important part of data analysis in many areas of
bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing …