User profiles for Orkun S Soyer

orkun s soyer

University of Warwick
Verified email at warwick.ac.uk
Cited by 3767

Challenges in microbial ecology: building predictive understanding of community function and dynamics

…, Isaac Newton Institute Fellows, OS Soyer - The ISME …, 2016 - academic.oup.com
The importance of microbial communities (MCs) cannot be overstated. MCs underpin the
biogeochemical cycles of the earth’s soil, oceans and the atmosphere, and perform ecosystem …

[HTML][HTML] Synthetic microbial communities

T Großkopf, OS Soyer - Current opinion in microbiology, 2014 - Elsevier
Highlights • Microbial interactions and system function are two ways to study communities. •
Natural microbial communities are difficult to define and to study. • Synthetic microbial …

Cooperation in microbial communities and their biotechnological applications

M Cavaliere, S Feng, OS Soyer… - Environmental …, 2017 - Wiley Online Library
Microbial communities are increasingly utilized in biotechnology. Efficiency and productivity
in many of these applications depends on the presence of cooperative interactions between …

The roles of integration in molecular systems biology

MA O'malley, OS Soyer - Studies in History and Philosophy of Science Part …, 2012 - Elsevier
A common way to think about scientific practice involves classifying it as hypothesis- or data-driven.
We argue that although such distinctions might illuminate scientific practice very …

[HTML][HTML] The evolution of connectivity in metabolic networks

T Pfeiffer, OS Soyer, S Bonhoeffer - PLoS biology, 2005 - journals.plos.org
Processes in living cells are the result of interactions between biochemical compounds in
highly complex biochemical networks. It is a major challenge in biology to understand causes …

[HTML][HTML] STRONG: metagenomics strain resolution on assembly graphs

C Quince, S Nurk, S Raguideau, R James, OS Soyer… - Genome biology, 2021 - Springer
We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains
de novo, from multiple metagenome samples. STRONG performs coassembly, and binning …

Microbial diversity arising from thermodynamic constraints

T Großkopf, OS Soyer - The ISME journal, 2016 - academic.oup.com
The microbial world displays an immense taxonomic diversity. This diversity is manifested
also in a multitude of metabolic pathways that can utilise different substrates and produce …

Scanning ion conductance microscopy reveals differences in the ionic environments of gram-positive and negative bacteria

…, D Perry, C Zerfass, M Asally, OS Soyer… - Analytical …, 2020 - ACS Publications
This paper reports on the use of scanning ion conductance microscopy (SICM) to locally
map the ionic properties and charge environment of two live bacterial strains: the Gram-…

Evolution of complexity in signaling pathways

OS Soyer, S Bonhoeffer - Proceedings of the National …, 2006 - National Acad Sciences
It is not clear how biological pathways evolve to mediate a certain physiological response
and why they show a level of complexity that is generally above the minimum required to …

Bioelectrical understanding and engineering of cell biology

…, PR Unwin, M Asally, OS Soyer - Journal of the …, 2020 - royalsocietypublishing.org
The last five decades of molecular and systems biology research have provided unprecedented
insights into the molecular and genetic basis of many cellular processes. Despite these …