User profiles for Orkun S Soyer
orkun s soyerUniversity of Warwick Verified email at warwick.ac.uk Cited by 3767 |
Challenges in microbial ecology: building predictive understanding of community function and dynamics
…, Isaac Newton Institute Fellows, OS Soyer - The ISME …, 2016 - academic.oup.com
The importance of microbial communities (MCs) cannot be overstated. MCs underpin the
biogeochemical cycles of the earth’s soil, oceans and the atmosphere, and perform ecosystem …
biogeochemical cycles of the earth’s soil, oceans and the atmosphere, and perform ecosystem …
[HTML][HTML] Synthetic microbial communities
T Großkopf, OS Soyer - Current opinion in microbiology, 2014 - Elsevier
Highlights • Microbial interactions and system function are two ways to study communities. •
Natural microbial communities are difficult to define and to study. • Synthetic microbial …
Natural microbial communities are difficult to define and to study. • Synthetic microbial …
Cooperation in microbial communities and their biotechnological applications
Microbial communities are increasingly utilized in biotechnology. Efficiency and productivity
in many of these applications depends on the presence of cooperative interactions between …
in many of these applications depends on the presence of cooperative interactions between …
The roles of integration in molecular systems biology
MA O'malley, OS Soyer - Studies in History and Philosophy of Science Part …, 2012 - Elsevier
A common way to think about scientific practice involves classifying it as hypothesis- or data-driven.
We argue that although such distinctions might illuminate scientific practice very …
We argue that although such distinctions might illuminate scientific practice very …
[HTML][HTML] The evolution of connectivity in metabolic networks
Processes in living cells are the result of interactions between biochemical compounds in
highly complex biochemical networks. It is a major challenge in biology to understand causes …
highly complex biochemical networks. It is a major challenge in biology to understand causes …
[HTML][HTML] STRONG: metagenomics strain resolution on assembly graphs
We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains
de novo, from multiple metagenome samples. STRONG performs coassembly, and binning …
de novo, from multiple metagenome samples. STRONG performs coassembly, and binning …
Microbial diversity arising from thermodynamic constraints
T Großkopf, OS Soyer - The ISME journal, 2016 - academic.oup.com
The microbial world displays an immense taxonomic diversity. This diversity is manifested
also in a multitude of metabolic pathways that can utilise different substrates and produce …
also in a multitude of metabolic pathways that can utilise different substrates and produce …
Scanning ion conductance microscopy reveals differences in the ionic environments of gram-positive and negative bacteria
This paper reports on the use of scanning ion conductance microscopy (SICM) to locally
map the ionic properties and charge environment of two live bacterial strains: the Gram-…
map the ionic properties and charge environment of two live bacterial strains: the Gram-…
Evolution of complexity in signaling pathways
OS Soyer, S Bonhoeffer - Proceedings of the National …, 2006 - National Acad Sciences
It is not clear how biological pathways evolve to mediate a certain physiological response
and why they show a level of complexity that is generally above the minimum required to …
and why they show a level of complexity that is generally above the minimum required to …
Bioelectrical understanding and engineering of cell biology
The last five decades of molecular and systems biology research have provided unprecedented
insights into the molecular and genetic basis of many cellular processes. Despite these …
insights into the molecular and genetic basis of many cellular processes. Despite these …