User profiles for Loïc Mangnier

Loïc Mangnier

Arnaud Droit Lab
Verified email at ulaval.ca
Cited by 70

Extensive and accurate benchmarking of DIA acquisition methods and software tools using a complex proteomic standard

…, C Joly-Beauparlant, L Mangnier… - Journal of Proteome …, 2021 - ACS Publications
Over the past decade, the data-independent acquisition mode has gained popularity for
broad coverage of complex proteomes by LC-MS/MS and quantification of low-abundance …

[HTML][HTML] DIA proteomics data from a UPS1-spiked E. coli protein mixture processed with six software tools

C Gotti, F Roux-Dalvai, C Joly-Beauparlant, L Mangnier… - Data in Brief, 2022 - Elsevier
In this article, we provide a proteomic reference dataset that has been initially generated for
a benchmarking of software tools for Data-Independent Acquisition (DIA) analysis. This large …

[HTML][HTML] Sex difference contributes to phenotypic diversity in individuals with neurodevelopmental disorders

T Cuppens, J Shatto, L Mangnier, AA Kumar… - Frontiers in …, 2023 - frontiersin.org
Objective Gain a better understanding of sex-specific differences in individuals with global
developmental delay (GDD), with a focus on phenotypes and genotypes. Methods Using the …

Cis-regulatory hubs: a new 3D model of complex disease genetics with an application to schizophrenia

L Mangnier, C Joly-Beauparlant, A Droit… - Life Science …, 2022 - life-science-alliance.org
The 3D conformation of the chromatin creates complex networks of noncoding regulatory
regions (distal elements) and promoters impacting gene regulation. Despite the importance of …

Intégration d'annotations fonctionnelles dans les tests d'agrégation de variants rares sous vraisemblance rétrospective dans le cadre de devis familiaux

L Mangnier - 2022 - corpus.ulaval.ca
Depuis ces vingt dernières années et la démocratisation des technologies de séquençage
haut débit de l'ADN, l'accessibilité des données génomiques a permis le développement de …

Comprehensive benchmark of integrative strategies for analyzing microbiome-metabolome relationships

L Mangnier, M Mariaz, N Vashist, A Mathieu, A Bodein… - bioRxiv, 2024 - biorxiv.org
Background: The exponential growth of high-throughput sequencing technologies was an
incredible opportunity for researchers to combine different -omics within computational …

CTCF mediates the Activity-by-contact derived cis-regulatory hubs

M Lee, L Mangnier, CC Padilla, DP Lee, W Tan, PY Li… - bioRxiv, 2022 - biorxiv.org
The 3D chromatin architecture establishes a complex network of genes and regulatory
elements necessary for transcriptomic regulation in development and disease. This network can …

Cis-Regulatory Hubs: a Relevant 3D Model to Study the Genetics of Complex Diseases with an Application to Schizophrenia

L Mangnier, C Joly-Beauparlant, A Droit, S Bilodeau… - bioRxiv, 2021 - biorxiv.org
Background The 3-dimensional (3D) conformation of the chromatin creates complex networks
of noncoding regulatory regions (distal elements) and genes with important implications in …

RetroFun-RVS: a retrospective family-based framework for rare variant analysis incorporating functional annotations

L Mangnier, I Ruczinski, J Ricard, C Moreau, S Girard… - bioRxiv, 2022 - biorxiv.org
A large proportion of genetic variations involved in complex diseases are rare and located
within non-coding regions, making the interpretation of underlying biological mechanisms a …

[CITATION][C] Sex difference contributes to phenotypic diversity in individidual neurodevelopmental differences

…, J Shatto, L Mangnier… - EUROPEAN …, 2024 - … , 4 CRINAN ST, LONDON, N1 9XW …