User profiles for Jean-Fred Fontaine

Jean Fred Fontaine

Johannes Gutenberg University Mainz
Verified email at uni-mainz.de
Cited by 2496

[HTML][HTML] HIPPIE: Integrating protein interaction networks with experiment based quality scores

MH Schaefer, JF Fontaine, A Vinayagam, P Porras… - PloS one, 2012 - journals.plos.org
Protein function is often modulated by protein-protein interactions (PPIs) and therefore
defining the partners of a protein helps to understand its activity. PPIs can be detected through …

[PDF][PDF] Aversion to nicotine is regulated by the balanced activity of β4 and α5 nicotinic receptor subunits in the medial habenula

…, B Antolin-Fontes, S Auer, S Filkin, S Pons, JF Fontaine… - Neuron, 2011 - cell.com
Nicotine dependence is linked to single nucleotide polymorphisms in the CHRNB4-CHRNA3-CHRNA5
gene cluster encoding the α3β4α5 nicotinic acetylcholine receptor (nAChR). …

[HTML][HTML] The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

…, K Noto, C Elkan, Z Lu, RI Dogan, JF Fontaine… - BMC …, 2011 - Springer
Background Determining usefulness of biomedical text mining systems requires realistic task
definition and data selection criteria without artificial constraints, measuring performance …

MedlineRanker: flexible ranking of biomedical literature

JF Fontaine, A Barbosa-Silva, M Schaefer… - Nucleic acids …, 2009 - academic.oup.com
The biomedical literature is represented by millions of abstracts available in the Medline
database. These abstracts can be queried with the PubMed interface, which provides a keyword…

[HTML][HTML] CXCL5 limits macrophage foam cell formation in atherosclerosis

…, L Leukel, R Yilmaz, JF Fontaine… - The Journal of …, 2013 - Am Soc Clin Investig
The ELR + -CXCL chemokines have been described typically as potent chemoattractants
and activators of neutrophils during the acute phase of inflammation. Their role in …

[PDF][PDF] Interactome mapping provides a network of neurodegenerative disease proteins and uncovers widespread protein aggregation in affected brains

…, J Russ, SP Riechers, S Jain, M Coughlin, JF Fontaine… - Cell reports, 2020 - cell.com
Interactome maps are valuable resources to elucidate protein function and disease mechanisms.
Here, we report on an interactome map that focuses on neurodegenerative disease (…

Genie: literature-based gene prioritization at multi genomic scale

JF Fontaine, F Priller, A Barbosa-Silva… - Nucleic acids …, 2011 - academic.oup.com
Biomedical literature is traditionally used as a way to inform scientists of the relevance of
genes in relation to a research topic. However many genes, especially from poorly studied …

Mutually exclusive signaling signatures define the hepatic and pancreatic progenitor cell lineage divergence

…, N Cerdá-Esteban, JF Fontaine… - Genes & …, 2013 - genesdev.cshlp.org
Understanding how distinct cell types arise from multipotent progenitor cells is a major quest
in stem cell biology. The liver and pancreas share many aspects of their early development …

[HTML][HTML] Adding protein context to the human protein-protein interaction network to reveal meaningful interactions

…, JE Shoemaker, Y Matsuoka, JF Fontaine… - PLoS computational …, 2013 - journals.plos.org
Interactions of proteins regulate signaling, catalysis, gene expression and many other cellular
functions. Therefore, characterizing the entire human interactome is a key effort in current …

[HTML][HTML] Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality

M Sprang, MA Andrade-Navarro, JF Fontaine - BMC bioinformatics, 2022 - Springer
Background The constant evolving and development of next-generation sequencing
techniques lead to high throughput data composed of datasets that include a large number of …