User profiles for Jean-Fred Fontaine
Jean Fred FontaineJohannes Gutenberg University Mainz Verified email at uni-mainz.de Cited by 2496 |
[HTML][HTML] HIPPIE: Integrating protein interaction networks with experiment based quality scores
Protein function is often modulated by protein-protein interactions (PPIs) and therefore
defining the partners of a protein helps to understand its activity. PPIs can be detected through …
defining the partners of a protein helps to understand its activity. PPIs can be detected through …
[PDF][PDF] Aversion to nicotine is regulated by the balanced activity of β4 and α5 nicotinic receptor subunits in the medial habenula
…, B Antolin-Fontes, S Auer, S Filkin, S Pons, JF Fontaine… - Neuron, 2011 - cell.com
Nicotine dependence is linked to single nucleotide polymorphisms in the CHRNB4-CHRNA3-CHRNA5
gene cluster encoding the α3β4α5 nicotinic acetylcholine receptor (nAChR). …
gene cluster encoding the α3β4α5 nicotinic acetylcholine receptor (nAChR). …
[HTML][HTML] The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
Background Determining usefulness of biomedical text mining systems requires realistic task
definition and data selection criteria without artificial constraints, measuring performance …
definition and data selection criteria without artificial constraints, measuring performance …
MedlineRanker: flexible ranking of biomedical literature
The biomedical literature is represented by millions of abstracts available in the Medline
database. These abstracts can be queried with the PubMed interface, which provides a keyword…
database. These abstracts can be queried with the PubMed interface, which provides a keyword…
[HTML][HTML] CXCL5 limits macrophage foam cell formation in atherosclerosis
…, L Leukel, R Yilmaz, JF Fontaine… - The Journal of …, 2013 - Am Soc Clin Investig
The ELR + -CXCL chemokines have been described typically as potent chemoattractants
and activators of neutrophils during the acute phase of inflammation. Their role in …
and activators of neutrophils during the acute phase of inflammation. Their role in …
[PDF][PDF] Interactome mapping provides a network of neurodegenerative disease proteins and uncovers widespread protein aggregation in affected brains
…, J Russ, SP Riechers, S Jain, M Coughlin, JF Fontaine… - Cell reports, 2020 - cell.com
Interactome maps are valuable resources to elucidate protein function and disease mechanisms.
Here, we report on an interactome map that focuses on neurodegenerative disease (…
Here, we report on an interactome map that focuses on neurodegenerative disease (…
Genie: literature-based gene prioritization at multi genomic scale
JF Fontaine, F Priller, A Barbosa-Silva… - Nucleic acids …, 2011 - academic.oup.com
Biomedical literature is traditionally used as a way to inform scientists of the relevance of
genes in relation to a research topic. However many genes, especially from poorly studied …
genes in relation to a research topic. However many genes, especially from poorly studied …
Mutually exclusive signaling signatures define the hepatic and pancreatic progenitor cell lineage divergence
…, N Cerdá-Esteban, JF Fontaine… - Genes & …, 2013 - genesdev.cshlp.org
Understanding how distinct cell types arise from multipotent progenitor cells is a major quest
in stem cell biology. The liver and pancreas share many aspects of their early development …
in stem cell biology. The liver and pancreas share many aspects of their early development …
[HTML][HTML] Adding protein context to the human protein-protein interaction network to reveal meaningful interactions
…, JE Shoemaker, Y Matsuoka, JF Fontaine… - PLoS computational …, 2013 - journals.plos.org
Interactions of proteins regulate signaling, catalysis, gene expression and many other cellular
functions. Therefore, characterizing the entire human interactome is a key effort in current …
functions. Therefore, characterizing the entire human interactome is a key effort in current …
[HTML][HTML] Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality
Background The constant evolving and development of next-generation sequencing
techniques lead to high throughput data composed of datasets that include a large number of …
techniques lead to high throughput data composed of datasets that include a large number of …