Eukaryotic plankton diversity in the sunlit ocean

C De Vargas, S Audic, N Henry, J Decelle, F Mahé… - Science, 2015 - science.org
Marine plankton support global biological and geochemical processes. Surveys of their
biodiversity have hitherto been geographically restricted and have not accounted for the full …

[HTML][HTML] A holistic approach to marine eco-systems biology

…, SG Acinas, P Bork, C Bowler, C De Vargas… - PLoS …, 2011 - journals.plos.org
Colomban De Vargas, … Colomban De Vargas, … Citation: Karsenti E, Acinas SG, Bork
P, Bowler C, De Vargas C, Raes J, et al. (2011) A Holistic Approach to Marine Eco-Systems …

Tara Oceans: towards global ocean ecosystems biology

…, MB Sullivan, P Wincker, C de Vargas - Nature Reviews …, 2020 - nature.com
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international, multidisciplinary …

Structure and function of the global ocean microbiome

…, Tara Oceans coordinators, C Bowler, C De Vargas… - Science, 2015 - science.org
Microbes are dominant drivers of biogeochemical processes, yet drawing a global picture of
functional diversity, microbial community structure, and their ecological determinants …

Determinants of community structure in the global plankton interactome

…, MB Sullivan, E Karsenti, C Bowler, C De Vargas… - Science, 2015 - science.org
Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the
Tara Oceans project, we studied the photic zone interactome using environmental factors and …

[HTML][HTML] Pan genome of the phytoplankton Emiliania underpins its global distribution

…, AF Sarno, J Shmutz, D Schroeder, C De Vargas… - Nature, 2013 - nature.com
Coccolithophores have influenced the global climate for over 200 million years 1 . These
marine phytoplankton can account for 20 per cent of total carbon fixation in some systems 2 . …

[HTML][HTML] Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells

…, ME Sieracki, O Jaillon, P Wincker, C Vargas… - Scientific Reports, 2017 - nature.com
Pico-sized eukaryotes play key roles in the functioning of marine ecosystems, but we still
have a limited knowledge on their ecology and evolution. The MAST-4 lineage is of particular …

UniEuk: Time to Speak a Common Language in Protistology!

…, J Del Campo, P Yilmaz, C de Vargas - Journal of Eukaryotic …, 2017 - Wiley Online Library
Universal taxonomic frameworks have been critical tools to structure the fields of botany,
zoology, mycology, and bacteriology as well as their large research communities. Animals, …

Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

…, P Hingamp, H Ogata, C de Vargas… - Environmental …, 2014 - Wiley Online Library
Sequencing of 16S rDNA polymerase chain reaction ( PCR ) amplicons is the most common
approach for investigating environmental prokaryotic diversity, despite the known biases …

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

…, C Boutte, G Burgaud, C de Vargas… - Nucleic acids …, 2012 - academic.oup.com
The interrogation of genetic markers in environmental meta-barcoding studies is currently
seriously hindered by the lack of taxonomically curated reference data sets for the targeted …