User profiles for Björn Usadel
Björn UsadelProfessor of Biological Data Science,Heinrich-Heine-University Düsseldorf … Verified email at fz-juelich.de Cited by 72612 |
GMD@ CSB. DB: the Golm metabolome database
Metabolomics, in particular gas chromatography–mass spectrometry (GC–MS) based metabolite
profiling of biological extracts, is rapidly becoming one of the cornerstones of functional …
profiling of biological extracts, is rapidly becoming one of the cornerstones of functional …
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
Recent rapid advances in next generation RNA sequencing (RNA-Seq)-based provide
researchers with unprecedentedly large data sets and open new perspectives in transcriptomics. …
researchers with unprecedentedly large data sets and open new perspectives in transcriptomics. …
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses
B Usadel, A Nagel, O Thimm, H Redestig… - Plant …, 2005 - academic.oup.com
MapMan is a user-driven tool that displays large genomics datasets onto diagrams of
metabolic pathways or other processes. Here, we present new developments, including …
metabolic pathways or other processes. Here, we present new developments, including …
M ercator: a fast and simple web server for genome scale functional annotation of plant sequence data
Next‐generation technologies generate an overwhelming amount of gene sequence data.
Efficient annotation tools are required to make these data amenable to functional genomics …
Efficient annotation tools are required to make these data amenable to functional genomics …
Genome‐wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus
Affymetrix ATH1 arrays, large‐scale real‐time reverse transcription PCR of ∼ 2200 transcription
factor genes and other gene families, and analyses of metabolites and enzyme activities …
factor genes and other gene families, and analyses of metabolites and enzyme activities …
A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize
B Usadel, F Poree, A Nagel, M Lohse… - Plant, cell & …, 2009 - Wiley Online Library
MapMan is a software tool that supports the visualization of profiling data sets in the context
of existing knowledge. Scavenger modules generate hierarchical and essentially non‐…
of existing knowledge. Scavenger modules generate hierarchical and essentially non‐…
Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats
Gene co‐expression analysis has emerged in the past 5 years as a powerful tool for gene
function prediction. In essence, co‐expression analysis asks the question ‘what are the genes …
function prediction. In essence, co‐expression analysis asks the question ‘what are the genes …
Starch as a major integrator in the regulation of plant growth
…, H Witucka-Wall, Y Gibon, B Usadel… - Proceedings of the …, 2009 - National Acad Sciences
Rising demand for food and bioenergy makes it imperative to breed for increased crop yield.
Vegetative plant growth could be driven by resource acquisition or developmental programs…
Vegetative plant growth could be driven by resource acquisition or developmental programs…
[HTML][HTML] The genome of the stress-tolerant wild tomato species Solanum pennellii
Solanum pennellii is a wild tomato species endemic to Andean regions in South America,
where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and …
where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and …
Quantitation in mass-spectrometry-based proteomics
WX Schulze, B Usadel - Annual review of plant biology, 2010 - annualreviews.org
Mass-spectrometry-based proteomics, the large-scale analysis of proteins by mass spectrometry,
has emerged as a new technology over the last decade and become routine in many …
has emerged as a new technology over the last decade and become routine in many …