User profiles for Björn Usadel

Björn Usadel

Professor of Biological Data Science,Heinrich-Heine-University Düsseldorf …
Verified email at fz-juelich.de
Cited by 72612

GMD@ CSB. DB: the Golm metabolome database

…, N Schauer, S Krueger, C Birkemeyer, B Usadel… - …, 2005 - academic.oup.com
Metabolomics, in particular gas chromatography–mass spectrometry (GC–MS) based metabolite
profiling of biological extracts, is rapidly becoming one of the cornerstones of functional …

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

…, AR Fernie, JE Lunn, M Stitt, B Usadel - Nucleic acids …, 2012 - academic.oup.com
Recent rapid advances in next generation RNA sequencing (RNA-Seq)-based provide
researchers with unprecedentedly large data sets and open new perspectives in transcriptomics. …

Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses

B Usadel, A Nagel, O Thimm, H Redestig… - Plant …, 2005 - academic.oup.com
MapMan is a user-driven tool that displays large genomics datasets onto diagrams of
metabolic pathways or other processes. Here, we present new developments, including …

M ercator: a fast and simple web server for genome scale functional annotation of plant sequence data

…, R Zrenner, T Tohge, AR Fernie, M Stitt, B Usadel - 2014 - Wiley Online Library
Next‐generation technologies generate an overwhelming amount of gene sequence data.
Efficient annotation tools are required to make these data amenable to functional genomics …

Genome‐wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus

…, W Zheng, BD Pant, O Bläsing, B Usadel… - Plant, cell & …, 2007 - Wiley Online Library
Affymetrix ATH1 arrays, large‐scale real‐time reverse transcription PCR of ∼ 2200 transcription
factor genes and other gene families, and analyses of metabolites and enzyme activities …

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

B Usadel, F Poree, A Nagel, M Lohse… - Plant, cell & …, 2009 - Wiley Online Library
MapMan is a software tool that supports the visualization of profiling data sets in the context
of existing knowledge. Scavenger modules generate hierarchical and essentially non‐…

Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats

B Usadel, T Obayashi, M Mutwil… - Plant, cell & …, 2009 - Wiley Online Library
Gene co‐expression analysis has emerged in the past 5 years as a powerful tool for gene
function prediction. In essence, co‐expression analysis asks the question ‘what are the genes …

Starch as a major integrator in the regulation of plant growth

…, H Witucka-Wall, Y Gibon, B Usadel… - Proceedings of the …, 2009 - National Acad Sciences
Rising demand for food and bioenergy makes it imperative to breed for increased crop yield.
Vegetative plant growth could be driven by resource acquisition or developmental programs…

[HTML][HTML] The genome of the stress-tolerant wild tomato species Solanum pennellii

…, F Carrari, JJ Giovannoni, D Weigel, B Usadel… - Nature …, 2014 - nature.com
Solanum pennellii is a wild tomato species endemic to Andean regions in South America,
where it has evolved to thrive in arid habitats. Because of its extreme stress tolerance and …

Quantitation in mass-spectrometry-based proteomics

WX Schulze, B Usadel - Annual review of plant biology, 2010 - annualreviews.org
Mass-spectrometry-based proteomics, the large-scale analysis of proteins by mass spectrometry,
has emerged as a new technology over the last decade and become routine in many …