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Series GSE173125 Query DataSets for GSE173125
Status Public on Dec 29, 2021
Title H3K9me3 and H3K27me3 ChIP-Seq in retinoblastoma 1 (RB1) knock out cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Comparative analysis of H3K9me3 and H3K27me3 in RB1 KO and wild type IMR-90 cells
 
Overall design Examination of 2 histone modifications in RB1 KO and wild type IMR-90 cells
 
Contributor(s) Wong KM, Morrison AJ
Citation(s) 34983823
Submission date Apr 22, 2021
Last update date Feb 02, 2022
Contact name Ashby J Morrison
E-mail(s) ashbym@stanford.edu
Phone (650)724-0422
Organization name Stanford University
Department Biology
Lab Morrison
Street address 371 Serra Mall Gilbert Bldg, Room 326
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (12)
GSM5260448 RBKO_H3K9me3_rep1
GSM5260449 RBKO_H3K9me3_rep2
GSM5260450 RBKO_H3K27me3_rep1
This SubSeries is part of SuperSeries:
GSE173128 ChIP-Seq, CPD-Seq and RNA-Seq in retinoblastoma 1 (RB1) knock out cells
Relations
BioProject PRJNA723852
SRA SRP315912

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173125_RbKO_H3K27me3.fc.signal.bigwig 1.5 Gb (ftp)(http) BIGWIG
GSE173125_RbKO_H3K9me3.fc.signal.bigwig 1.8 Gb (ftp)(http) BIGWIG
GSE173125_WT_H3K27me3.fc.signal.bigwig 1.2 Gb (ftp)(http) BIGWIG
GSE173125_WT_H3K9me3.fc.signal.bigwig 1.8 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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