 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 14, 2020 |
| Title |
DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Tumorigenesis in different segments of the intestinal tract involves tissue-specific oncogenic drivers. In the colon, complement component 3 (C3) activation is a major contributor to inflammation and malignancies. By contrast, tumorigenesis in the small intestine involves fatty acid–binding protein 1. However, little is known of the upstream mechanisms driving their expressions in different segments of the intestinal tract. Here, we report that the RNA-binding protein DDX5 binds to the mRNA transcripts of C3 and fatty acid–binding protein 1 to augment their expressions posttranscriptionally. Knocking out DDX5 in epithelial cells protected mice from intestinal tumorigenesis and dextran sodium sulfate–induced col- itis. Identification of DDX5 as a common upstream regulator of tissue-specific oncogenic molecules provides an excellent therapeutic target for intestinal diseases.
|
| |
|
| Overall design |
For steady state experiment, 8 week old littermates in wildtype or knockout genetic background were used for tissue harvest.
|
| |
|
| Contributor(s) |
Abbasi N, Long T, Li Y, Yee BA, Cho BS, Hernandez JE, Ma E, Patel PR, Sahoo D, Sayed IM, Varki N, Das S, Ghosh P, Yeo GW, Huang WJ |
| Citation(s) |
32817263 |
| Submission date |
Dec 14, 2018 |
| Last update date |
Nov 13, 2020 |
| Contact name |
Wendy Huang |
| E-mail(s) |
wjh003@ucsd.edu
|
| Organization name |
University of California San Diego
|
| Department |
Cellular and Molecular Medicine
|
| Street address |
9500 Gilman Drive #0651
|
| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA510109 |
| SRA |
SRP173481 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE123881_healthy_Ileum.txt.gz |
1.6 Mb |
(ftp)(http) |
TXT |
| GSE123881_healthy_colon.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...