|
| Status |
Public on Dec 01, 2017 |
| Title |
Systematic transcriptomics reveals a biphasic mode of sarcomere morphogenesis in flight muscles regulated by Spalt |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Muscles organise a pseudo-crystalline array of actin, myosin and titin filaments to build force-producing sarcomeres. To study how sarcomeres are built, we performed mRNA-sequencing of developing Drosophila flight muscles and identified 40 distinct expression profile clusters. Strikingly, two clusters are strongly enriched for sarcomeric components. Temporal gene expression together with detailed morphological analysis enabled us to define two distinct phases of sarcomere development, both of which require the transcriptional regulator Spalt major. During the first sarcomere formation phase, 2.0 µm long immature sarcomeres assemble myofibrils that spontaneously contract. In the second sarcomere maturation phase, sarcomeres grow to their final 3.2 µm length and 1.5 µm diameter and acquire stretch-sensitivity. Interestingly, the final number of myofibrils per flight muscle fiber is determined at the onset of the first phase and remains constant. Together, this defines a biphasic mode of sarcomere and myofibril morphogenesis – a new concept which may also apply to vertebrate muscle or heart development.
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| |
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| Overall design |
Part I: An 8-point timecourse of wild-type flight muscle development in Drosophila melanogaster was analyzed with duplicates/triplicates for each timepoint Part II: A Mef2-Gal4 x salmIR timecourse in duplicate at 4 timepoints was compared to wild-type flight muscle
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| |
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| Contributor(s) |
Spletter ML, Schnorrer F, Yeroslaviz A, Stark A, Habermann B |
| Citation(s) |
29846170, 34996845 |
| Submission date |
Nov 21, 2017 |
| Last update date |
Feb 02, 2022 |
| Contact name |
Maria Lynn Spletter |
| E-mail(s) |
maria.spletter@umkc.edu
|
| Phone |
+19133135564
|
| Organization name |
University of Missouri Kansas City
|
| Department |
Biological and Biomedical Systems
|
| Lab |
RNA-dependent regulation during development processes
|
| Street address |
5009 Rockhill Rd
|
| City |
Kansas City |
| State/province |
MO |
| ZIP/Postal code |
64110 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
| GPL17275 |
Illumina HiSeq 2500 (Drosophila melanogaster) |
|
| Samples (28)
|
|
| Relations |
| BioProject |
PRJNA419412 |
| SRA |
SRP125432 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE107247_DESeq2_IFM_16hvs0h.xlsx |
1.3 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFM_1dvs90h.xlsx |
1.2 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFM_24hvs16h.xlsx |
1.2 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFM_30hvs24h.xlsx |
1.2 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFM_48hvs30h.xlsx |
1.3 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFM_72hvs30h.xlsx |
1.3 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFM_72hvs48h.xlsx |
1.3 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFM_90hvs72h.xlsx |
1.2 Mb |
(ftp)(http) |
XLSX |
| GSE107247_DESeq2_IFMvssalm_1d.txt.gz |
983.4 Kb |
(ftp)(http) |
TXT |
| GSE107247_DESeq2_IFMvssalm_24h.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE107247_DESeq2_IFMvssalm_30h.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE107247_DESeq2_IFMvssalm_72h.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE107247_DESeq2_salm_1dvs72h.txt.gz |
1.0 Mb |
(ftp)(http) |
TXT |
| GSE107247_DESeq2_salm_30hvs24h.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE107247_DESeq2_salm_72hvs30h.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE107247_Mfuzz_IFMTC_8TP_genes_1064iterations.txt.gz |
134.2 Kb |
(ftp)(http) |
TXT |
| GSE107247_Mfuzz_IFMTC_8TP_genes_1118iterations.txt.gz |
135.4 Kb |
(ftp)(http) |
TXT |
| GSE107247_Mfuzz_IFMTC_8TP_genes_975iterations.txt.gz |
133.6 Kb |
(ftp)(http) |
TXT |
| GSE107247_Mfuzz_IFMTC_8TP_inputdata.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
| GSE107247_Mfuzz_IFMTC_8TP_plots_1064iterations.pdf |
310.4 Kb |
(ftp)(http) |
PDF |
| GSE107247_Mfuzz_IFMTC_8TP_plots_1118iterations.pdf |
311.3 Kb |
(ftp)(http) |
PDF |
| GSE107247_Mfuzz_IFMTC_8TP_plots_975iterations.pdf |
310.3 Kb |
(ftp)(http) |
PDF |
| GSE107247_Mfuzz_salm_4TP_inputdata.xlsx |
2.0 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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