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Status |
Public on Jul 27, 2018 |
Title |
rne Rhodobacter sphaeroides |
Organism |
Cereibacter sphaeroides |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
Comparison of wild type and mutant strain with temperature-sensitive RNase E. Goal: to study the effect of RNase E on the transcriptome
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Overall design |
Total of 12 samples. Wild type and mutant were grown to exponential phase at 32 °C or 42° degree celsius. Biological triplicates were performed
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Contributor(s) |
Förstner KU, Reuscher C, Haberzettl K, Weber L, Klug G |
Citation(s) |
30456366 |
Submission date |
Sep 26, 2017 |
Last update date |
Jul 25, 2021 |
Contact name |
Konrad U. Förstner |
E-mail(s) |
foerstner@zbmed.de
|
Organization name |
ZB MED - Information Centre for Life Sciences
|
Department |
Information Services
|
Lab |
Förstner Lab
|
Street address |
Gleueler Str. 60
|
City |
Cologne |
State/province |
North Rhine-Westphalia |
ZIP/Postal code |
50931 |
Country |
Germany |
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Platforms (1) |
GPL24048 |
Illumina NextSeq 500 (Rhodobacter sphaeroides) |
|
Samples (12)
|
GSM2793963 |
RNA from wild type grown at 32 °C Replicate 1 |
GSM2793964 |
RNA from wild type grown at 32 °C Replicate 2 |
GSM2793965 |
RNA from wild type grown at 32 °C Replicate 3 |
GSM2793966 |
RNA from wild type grown at 42 °C Replicate 1 |
GSM2793967 |
RNA from wild type grown at 42 °C Replicate 2 |
GSM2793968 |
RNA from wild type grown at 42 °C Replicate 3 |
GSM2793969 |
RNA from mutant grown at 32 °C Replicate 1 |
GSM2793970 |
RNA from mutant grown at 32 °C Replicate 2 |
GSM2793971 |
RNA from mutant grown at 32 °C Replicate 3 |
GSM2793972 |
RNA from mutant grown at 42 °C Replicate 1 |
GSM2793973 |
RNA from mutant grown at 42 °C Replicate 2 |
GSM2793974 |
RNA from mutant grown at 42 °C Replicate 3 |
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Relations |
BioProject |
PRJNA412226 |
SRA |
SRP118912 |