The structure of the core NuRD repression complex provides insights into its interaction with chromatin

Elife. 2016 Apr 21:5:e13941. doi: 10.7554/eLife.13941.

Abstract

The NuRD complex is a multi-protein transcriptional corepressor that couples histone deacetylase and ATP-dependent chromatin remodelling activities. The complex regulates the higher-order structure of chromatin, and has important roles in the regulation of gene expression, DNA damage repair and cell differentiation. HDACs 1 and 2 are recruited by the MTA1 corepressor to form the catalytic core of the complex. The histone chaperone protein RBBP4, has previously been shown to bind to the carboxy-terminal tail of MTA1. We show that MTA1 recruits a second copy of RBBP4. The crystal structure reveals an extensive interface between MTA1 and RBBP4. An EM structure, supported by SAXS and crosslinking, reveals the architecture of the dimeric HDAC1:MTA1:RBBP4 assembly which forms the core of the NuRD complex. We find evidence that in this complex RBBP4 mediates interaction with histone H3 tails, but not histone H4, suggesting a mechanism for recruitment of the NuRD complex to chromatin.

Keywords: biochemistry; biophysics; chromatin; histone deacetylase; human; repression complex; structural biology; transcription regulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromatin / metabolism*
  • Crystallography, X-Ray
  • Histone Deacetylase 1
  • Histone Deacetylase 2
  • Histone Deacetylases
  • Mi-2 Nucleosome Remodeling and Deacetylase Complex / chemistry*
  • Mi-2 Nucleosome Remodeling and Deacetylase Complex / metabolism*
  • Protein Conformation
  • Repressor Proteins
  • Retinoblastoma-Binding Protein 4
  • Trans-Activators

Substances

  • Chromatin
  • MTA1 protein, human
  • RBBP4 protein, human
  • Repressor Proteins
  • Retinoblastoma-Binding Protein 4
  • Trans-Activators
  • HDAC1 protein, human
  • HDAC2 protein, human
  • Histone Deacetylase 1
  • Histone Deacetylase 2
  • Histone Deacetylases
  • Mi-2 Nucleosome Remodeling and Deacetylase Complex