PIP degron proteins, substrates of CRL4Cdt2, and not PIP boxes, interfere with DNA polymerase η and κ focus formation on UV damage

Nucleic Acids Res. 2014 Apr;42(6):3692-706. doi: 10.1093/nar/gkt1400. Epub 2014 Jan 14.

Abstract

Proliferating cell nuclear antigen (PCNA) is a well-known scaffold for many DNA replication and repair proteins, but how the switch between partners is regulated is currently unclear. Interaction with PCNA occurs via a domain known as a PCNA-Interacting Protein motif (PIP box). More recently, an additional specialized PIP box has been described, the « PIP degron », that targets PCNA-interacting proteins for proteasomal degradation via the E3 ubiquitin ligase CRL4(Cdt2). Here we provide evidence that CRL4(Cdt2)-dependent degradation of PIP degron proteins plays a role in the switch of PCNA partners during the DNA damage response by facilitating accumulation of translesion synthesis DNA polymerases into nuclear foci. We show that expression of a nondegradable PIP degron (Cdt1) impairs both Pol η and Pol κ focus formation on ultraviolet irradiation and reduces cell viability, while canonical PIP box-containing proteins have no effect. Furthermore, we identify PIP degron-containing peptides from several substrates of CRL4(Cdt2) as efficient inhibitors of Pol η foci formation. By site-directed mutagenesis we show that inhibition depends on a conserved threonine residue that confers high affinity for PCNA-binding. Altogether these findings reveal an important regulative role for the CRL4(Cdt2) pathway in the switch of PCNA partners on DNA damage.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Cycle Proteins / chemistry
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • Cell Death
  • Cell Line
  • Cyclin-Dependent Kinase Inhibitor p21 / chemistry
  • DNA Damage*
  • DNA Repair*
  • DNA-Directed DNA Polymerase / metabolism*
  • Histone-Lysine N-Methyltransferase / chemistry
  • Humans
  • Mice
  • NIH 3T3 Cells
  • Nuclear Proteins / metabolism*
  • Protein Interaction Domains and Motifs
  • Proteolysis
  • Ubiquitin-Protein Ligases / metabolism*
  • Ultraviolet Rays

Substances

  • CDT1 protein, human
  • Cell Cycle Proteins
  • Cyclin-Dependent Kinase Inhibitor p21
  • DTL protein, human
  • Nuclear Proteins
  • Histone-Lysine N-Methyltransferase
  • Ubiquitin-Protein Ligases
  • DNA-Directed DNA Polymerase
  • POLK protein, human
  • Rad30 protein