SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase

Cell. 2013 May 9;153(4):855-68. doi: 10.1016/j.cell.2013.04.028.

Abstract

RNAP II is frequently paused near gene promoters in mammals, and its transition to productive elongation requires active recruitment of P-TEFb, a cyclin-dependent kinase for RNAP II and other key transcription elongation factors. A fraction of P-TEFb is sequestered in an inhibitory complex containing the 7SK noncoding RNA, but it has been unclear how P-TEFb is switched from the 7SK complex to RNAP II during transcription activation. We report that SRSF2 (also known as SC35, an SR-splicing factor) is part of the 7SK complex assembled at gene promoters and plays a direct role in transcription pause release. We demonstrate RNA-dependent, coordinated release of SRSF2 and P-TEFb from the 7SK complex and transcription activation via SRSF2 binding to promoter-associated nascent RNA. These findings reveal an unanticipated SR protein function, a role for promoter-proximal nascent RNA in gene activation, and an analogous mechanism to HIV Tat/TAR for activating cellular genes.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Enhancer Elements, Genetic
  • Gene Knockdown Techniques
  • Mice
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism*
  • Positive Transcriptional Elongation Factor B / metabolism
  • Promoter Regions, Genetic*
  • RNA Polymerase II / metabolism*
  • RNA, Untranslated / metabolism*
  • RNA-Binding Proteins / metabolism
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism*
  • Serine-Arginine Splicing Factors
  • Transcription Elongation, Genetic
  • Transcription Initiation, Genetic
  • Transcriptional Activation*

Substances

  • Nuclear Proteins
  • RNA, Untranslated
  • RNA-Binding Proteins
  • Ribonucleoproteins
  • SRSF2 protein, mouse
  • Serine-Arginine Splicing Factors
  • Positive Transcriptional Elongation Factor B
  • RNA Polymerase II

Associated data

  • GEO/GSE44583
  • GEO/GSE44591
  • GEO/GSE45517