Long-Range Correlations in Genomic DNA: A Signature of the Nucleosomal Structure

B. Audit, C. Thermes, C. Vaillant, Y. d'Aubenton-Carafa, J. F. Muzy, and A. Arneodo
Phys. Rev. Lett. 86, 2471 – Published 12 March 2001
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Abstract

We use the “wavelet transform microscope” to carry out a comparative statistical analysis of DNA bending profiles and of the corresponding DNA texts. In the three kingdoms, one reveals on both signals a characteristic scale of 100–200 bp that separates two different regimes of power-law correlations (PLC). In the small-scale regime, PLC are observed in eukaryotic, in double-strand DNA viral, and in archaeal genomes, which contrasts with their total absence in the genomes of eubacteria and their viruses. This strongly suggests that small-scale PLC are related to the mechanisms underlying the wrapping of DNA in the nucleosomal structure. We further speculate that the large scale PLC are the signature of the higher-order structure and dynamics of chromatin.

  • Received 26 September 2000

DOI:https://doi.org/10.1103/PhysRevLett.86.2471

©2001 American Physical Society

Authors & Affiliations

B. Audit1,*, C. Thermes2, C. Vaillant1, Y. d'Aubenton-Carafa2, J. F. Muzy1, and A. Arneodo1

  • 1Centre de Recherche Paul Pascal, avenue Schweitzer, 33600 Pessac, France
  • 2Centre de Génétique Moléculaire du CNRS, Laboratoire associé à l'Université Pierre et Marie Curie, Allée de la Terrasse, 91198 Gif-sur-Yvette, France

  • *Present address: Computational Genomics Group, EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK.

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Vol. 86, Iss. 11 — 12 March 2001

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