Abstract
Spindle assembly and function require precise control of microtubule nucleation and dynamics. The chromatin-driven spindle assembly pathway exerts such control locally in the vicinity of chromosomes. One of the key targets of this pathway is TPX2. The molecular mechanism of how TPX2 stimulates microtubule nucleation is not understood. Using microscopy-based dynamic in vitro reconstitution assays with purified proteins, we find that human TPX2 directly stabilizes growing microtubule ends and stimulates microtubule nucleation by stabilizing early microtubule nucleation intermediates. Human microtubule polymerase chTOG (XMAP215/Msps/Stu2p/Dis1/Alp14 homologue) only weakly promotes nucleation, but acts synergistically with TPX2. Hence, a combination of distinct and complementary activities is sufficient for efficient microtubule formation in vitro. Importins control the efficiency of the microtubule nucleation by selectively blocking the interaction of TPX2 with microtubule nucleation intermediates. This in vitro reconstitution reveals the molecular mechanism of regulated microtubule formation by a minimal nucleation module essential for chromatin-dependent microtubule nucleation in cells.
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Change history
05 October 2015
In the version of this Article originally published online there was an incorrect citation in the methods section. This sentence should have read “GMPCPP-stabilized biotinylated fluorescently labelled microtubule ‘seeds’ for assays with dynamic microtubules were prepared as described previously41 (containing 12% of either Atto647N- or Atto565-labelled tubulin)”. This error has been corrected.
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Acknowledgements
We thank I. Lüke and C. Thomas for insect cell culture maintenance; C. Thomas for help with protein expression, and cloning and purification of the biotinylated Kin1rigor construct; C. Duellberg (The Francis Crick Institute, UK) for a partially purified MonoQ fraction of the untagged human EB1 protein. We are grateful to R. Heald (University of California at Berkeley, USA), D. Görlich (Max Planck Institute for Biophysical Chemistry, Germany), S. Royle (Warwick Medical School, UK), G. Stier (European Molecular Biology Laboratory, Germany) and I. Vernos (Centre for Genomic Regulation, Spain) for providing various plasmids. We thank all the members of the Surrey laboratory for discussions, and F. Fourniol and C. Duellberg for critical reading of the manuscript. T.S. acknowledges the ERC (Project 323042) and Cancer Research UK for funding; J.R. was supported by a Cancer Research UK postdoctoral fellowship, an EMBO Long-Term Fellowship (LTF-615-2012), and a Sir Henry Wellcome Postdoctoral Fellowship (100145/Z/12/Z).
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J.R. and T.S. designed the study; J.R. generated the reagents and performed the experiments; J.R. and N.I.C. analysed the data; J.R. and T.S. wrote the manuscript.
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Integrated supplementary information
Supplementary Figure 3 TPX2 reduces catastrophes at the microtubule minus ends.
Modified box-and-whiskers plot showing the microtubule minus end catastrophe frequencies in the absence (control) and presence of 5 nM full-length mGFP-TPX2 and 250 nM mGFPTPX2mini, as indicated. Number of measured microtubule minus ends (total): control—n = 93, mGFP-TPX2—n = 63, mGFP-TPX2mini—n = 54. Number of catastrophes (total): control—n = 608, mGFP-TPX2—n = 168, mGFP-TPX2mini—n = 153. Microtubule growth time (total): control—395,972 s, mGFP-TPX2—276,060 s, mGFP-TPX2mini—235,408 s. For the modified box-and-whiskers plot the boxes range from 25th to 75th percentile, the whiskers span from 10th to 90th percentile, the horizontal line marks the mean value. Data were pooled from two datasets. Errors are SEM. ∗p ≤ 0.05; (only displayed for comparisons with control); determined for the comparison of mean values analysing raw data (Tukey’s test in conjunction with One Way ANOVA).
Supplementary Figure 4 Purified recombinant proteins used in this study.
Uncropped Coomassie Blue-stained SDS-PAGE gels of a biotinylated human TPX2, TPX2ΔN, and TPX2mini and similarly tagged monomeric Drosophila kinesin-1 rigor mutant and human chTOG. Note that all biotinylated TPX2 constructs and the kinesin-1 mutant have a BAPmTagBFP fused to their N-termini. The chTOG contains an mTagBFP-BAP tag at its Cterminus. The double bands visible for the constructs are not due to the protein degradation but a likely a consequence of different folding and/or maturation states of mTagBFP running with different molecular weights (as observed for mCherry, see for example, ref. 65). Massspectrometry analysis revealed very similar peptide coverage for faster and slower migrating forms of each protein displaying these double bands (data not shown). (b) Human SNAPTPX2 and SNAP-TPX2mini, (c) Human chTOG, chTOG-mGFP, and human EB1, (d) Human importin α and importin β. 1 μg of protein is loaded in all cases. Note that parts of Supplementary Fig. 2c are also depicted on Fig. 1b.
Supplementary Figure 5 Single molecule characterisation of TPX2 binding to growing microtubule ends and to GMPCPP microtubules.
(a) Example plots showing the time course of the measured fluorescence intensity, the calculated transition probability and the binarised probability of mGFP-TPX2mini at a growing microtubule end. (b) Single molecule dwell time and waiting time distributions of 5 nM mGFP-TPX2mini at growing microtubule ends (conditions as in Fig. 4e), with mono-exponential fits (magenta). (c) Average spatial distribution of SNAP-TPX2mini single molecule fluorescence intensities for two different time windows after start of microtubule growth; this agrees with similar measurements performed using microtubule end tracking and comet analysis (Fig. 4b). Averages of 139,000 (<4 min) and 160,000 (>4 min) frames were used to generate the curves. (d) Kymographs showing 50 pM mGFP-TPX2mini (green in merge) binding to GMPCPPstabilised Atto565-labelled microtubules (blue in merge) either in the absence or presence of additional 181 nM Aleax647-labelled SNAP-TPX2mini (magenta in merge), always in the absence of free tubulin. (e) The dissociation rate constant koff, and association rate ron for the conditions shown in d demonstrate that also in the presence of excess TPX2, turnover remains dynamic (7,327 and 6,029 binding events, respectively). (f) Kymographs showing 10 pM of full-length mGFP-TPX2 (green in merge) binding to GMPCPP-stabilised Atto565-labelled microtubules (blue in merge) either in the absence (left) or presence (right) of additional 11 nM Alexa647-labelled SNAP-TPX2 (magenta in merge), both in the absence of free tubulin. Scale bars as indicated.
Supplementary Figure 6 Surface-immobilised TPX2 induces microtubule ‘stub’ formation in TPX2 and tubulin concentration dependent manner.
(a) TIRF microscopy images of flow chamber surfaces pre-incubated with 125 nM of biotinylated mTagBFPtagged proteins visualised by mTagBFP fluorescence. These fields of view correspond to the ones depicting the Atto647N-labelled tubulin channel at the same protein concentrations (125 nM Kin1rigor, 125 nM chTOG, and 125 nM TPX2) on Fig. 5b. Scale bar as indicated. (b) Quantification of surface densities of biotinylated proteins at different concentrations based on mTagBFP-fluorescence. Three different fields of view were imaged for each condition after monitoring the microtubule nucleation using Atto647N-tubulin channel for experiments depicted on Fig. 5b, c. t = 0 when the sample is placed at 30 °C. (c) Quantification of Atto647N-tubulin intensities on different biotinylated protein surfaces (same as Fig. 5c and Supplementary Fig. 4b) at 15 min time point. t = 0 when the sample is placed at 30 °C. (d) Images of time series of TIRF microscopy images of Atto647N-labelled tubulin particles on a glass surfaces pre-incubated with 125 nM biotinylated TPX2 at increasing tubulin concentrations. Scale bar as indicated. (e) Plots of quantified time courses of the mean Atto647N-labelled tubulin intensities measured for the whole field of view at different tubulin concentrations as shown on Supplementary Fig. 4d. (f) Size-exclusion chromatography profiles showing TPX2, tubulin, and combinations of TPX2 and tubulin eluting from Superose 6 Increase column. Protein concentrations and peak elution volumes as indicated.
Supplementary Figure 7 The combined action of TPX2 and EB1 does not stimulate efficient microtubule nucleation and growth in ‘surface’ nucleation assay.
(a) Time series of TIRF microscopy images showing nucleation and growth of Atto647N-labelled microtubules on surfaces with immobilised biotinylated TPX2 (pre-incubated at 125 nM) in the absence (top row) or presence of 100 nM chTOG (middle row), or 100 nM human EB1 (bottom row). Atto647N-labelled tubulin concentration was 12.5 μM. Scale bar as indicated. t = 0 when the sample is placed at 30 °C. (b) Modified box-and-whiskers graph showing the microtubule growth speeds measured for immobilised dynamic microtubules, as in Fig. 3, growing in microtubule nucleation assay buffer in the presence of 7.5 μM tubulin and microtubule binding proteins at the indicated concentrations, as also used in the microtubule nucleation assays in Supplementary Fig. 5a. Number of 25 s microtubule growth intervals observed to calculate the mean growth speeds for each condition: control—n = 590, 100 nM EB1—n = 617, 100 nM TPX2—n = 379, 100 nM chTOG—n = 213. All events are from one dataset each. For the modified box-and-whiskers plot boxes range from 25th to 75th percentile, the whiskers span from 10th to 90th percentile, the horizontal line marks the mean value. ∗∗∗p ≤ 0.001 (only displayed for comparisons with control); determined for the comparison of mean values analysing raw data (Tukey’s test in conjunction with One Way ANOVA).
Supplementary Figure 8 EB1 activity does not synergise with TPX2 or chTOG in stimulating microtubule formation in the ‘solution’ nucleation assay.
(a) Time series of TIRF microscopy images showing Atto647N-labelled microtubules that nucleated in solution in the presence of biotinylated TPX2 for 1 min followed by binding to neutravidin-coated surfaces via biotinylated TPX2 in the absence (first row) or presence (second row) of untagged EB1. (b) Time series of TIRF microscopy images as in a, but now with biotinylated chTOG instead of biotinylated TPX2 in the absence (first row) or presence (second row) of untagged EB1. Atto647N-labelled tubulin concentration was always 12.5 μM. Other protein concentrations and scale bars as indicated.
Supplementary Figure 9 N-terminally truncated TPX2 promotes microtubule nucleation when combined with chTOG in the ‘surface’ nucleation assay.
Time series of TIRF microscopy images showing nucleation and growth of Atto647N-labelled microtubules on surfaces with immobilised biotinylated TPX2ΔN (pre-incubated at 125 nM) in the absence (first row) or presence of 100 nM untagged chTOG, as indicated. Tubulin concentration was 12.5 μM. Scale bar as indicated.
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Human chTOG is a microtubule polymerase.
4 nM human chTOG-mGFP (right, green) binds to the growing end of Atto647N-labelled microtubule (magenta) and increases its growth speed (right), compared to the control microtubule in the absence of chTOG-mGFP (left). Tubulin concentration was 7.5 μM. Time is in minutes. Scale bar is 3 μm. This movie relates to Fig. 1d. (AVI 1688 kb)
Localisation of mGFP-TPX2 on dynamic microtubules.
5 nM mGFP-TPX2 (left, green in merge) binds all along the lattice of Atto647N-labelled growing microtubules (magenta in merge). 0.25 nM mGFP-TPX2 (right, green in merge) binds to the growing ends of Atto647N-labelled microtubules (magenta in merge) and GMPCPP stabilised microtubule ‘seed’ regions. The lower panels show the mGFP-TPX2 channel only. Tubulin concentration was 7.5 μM. Time is in minutes. Scale bars are 3 μm. This movie relates to Fig. 2c–f. (AVI 2934 kb)
Surface-immobilised TPX2 arrests nucleation intermediates.
Microtubule nucleation and growth of Atto647N-labelled microtubules on a surface with immobilised biotinylated Kin1rigor control (pre-incubated at 125 nM, left), with biotinylated chTOG (pre-incubated at 125 nM, middle), or with biotinylated TPX2 (pre-incubated at 125 nM, right), as indicated. Atto647N-labelled tubulin concentration was always 12.5 μM. Time is in minutes. t = 0 when the sample is placed on the microscope at 30 °C. Scale bars are 6 μm. This movie relates to Fig. 5b. (AVI 5658 kb)
The combined action of TPX2 and chTOG synergistically stimulates efficient microtubule nucleation and growth.
Microtubule nucleation and growth of Atto647N-labelled microtubules on a surface with immobilised biotinylated TPX2 (pre-incubated at 125 nM, first and second movie from left) or, for controls, with biotinylated Kin1rigor (pre-incubated at 125 nM, third and fourth movie from left) in either the absence (1st and 3rd movie from left) or presence of 100 nM chTOG (second and fourth movie from left), as indicated. Atto647N-labelled tubulin concentration was always 12.5 μM. Time is in minutes. t = 0 when the sample is placed on the microscope at 30 °C. Scale bars are 6 μm. This movie relates to Fig. 5d. (AVI 9938 kb)
In solution TPX2 nucleates microtubules more efficiently than chTOG.
Nucleation and growth of Atto647N-labelled microtubules that were nucleated in solution in the presence of 25 nM biotinylated chTOG (left), 25 nM biotinylated TPX2 (middle), and 25 nM biotinylated TPX2 and 100 nM untagged chTOG (right) at 30 °C for 1 min, followed by binding to neutravidin-coated surfaces via the biotinylated protein. Atto647N-labelled tubulin concentration was always 12.5 μM. Time is in minutes. t = 0 when the sample is placed at 30 °C. Scale bars are 6 μm. This movie relates to Fig. 6b. (AVI 7160 kb)
N-terminal region of TPX2 is not required for synergistic TPX2/chTOG-dependent efficient microtubule nucleation and growth.
Nucleation and growth of Atto647N-labelled microtubules on a surface with immobilised biotinylated TPX2ΔN (pre-incubated at 125 nM) in the absence (left) or presence (right) of 100 nM chTOG, as indicated. Atto647N-labelled tubulin concentration was 12.5 μM. Time is in minutes. t = 0 when the sample is placed on the microscope at 30 °C. Scale bars are 6 μm. This movie relates to Fig. 7b and Supplementary Fig. 7. (AVI 6823 kb)
Regulation of TPX2 and chTOG-stimulated microtubule nucleation by importins.
Microtubule nucleation and growth on a surface with immobilised biotinylated rigor kinesin (pre-incubated at 125 nM) always in the presence of 100 nM chTOG and 12.5 μM Atto647N-labelled tubulin (magenta), without (first movie from left) and with additional 500 nM importin α/β complex (second movie from left), 100 nM mGFPTPX2 (green, third movie from left), or both 500 nM importin α/β and 100 nM mGFP-TPX2 (green, 4th movie from left), as indicated. Time is in minutes. t = 0 when the sample is placed on the microscope at 30 °C. Scale bars are 6 μm. This movie relates to Fig. 8a. (AVI 6584 kb)
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Roostalu, J., Cade, N. & Surrey, T. Complementary activities of TPX2 and chTOG constitute an efficient importin-regulated microtubule nucleation module. Nat Cell Biol 17, 1422–1434 (2015). https://doi.org/10.1038/ncb3241
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DOI: https://doi.org/10.1038/ncb3241
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