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Reciprocal regulation of p53 and malic enzymes modulates metabolism and senescence

Abstract

Cellular senescence both protects multicellular organisms from cancer and contributes to their ageing1. The pre-eminent tumour suppressor p53 has an important role in the induction and maintenance of senescence, but how it carries out this function remains poorly understood1,2,3. In addition, although increasing evidence supports the idea that metabolic changes underlie many cell-fate decisions and p53-mediated tumour suppression, few connections between metabolic enzymes and senescence have been established. Here we describe a new mechanism by which p53 links these functions. We show that p53 represses the expression of the tricarboxylic-acid-cycle-associated malic enzymes ME1 and ME2 in human and mouse cells. Both malic enzymes are important for NADPH production, lipogenesis and glutamine metabolism, but ME2 has a more profound effect. Through the inhibition of malic enzymes, p53 regulates cell metabolism and proliferation. Downregulation of ME1 and ME2 reciprocally activates p53 through distinct MDM2- and AMP-activated protein kinase-mediated mechanisms in a feed-forward manner, bolstering this pathway and enhancing p53 activation. Downregulation of ME1 and ME2 also modulates the outcome of p53 activation, leading to strong induction of senescence, but not apoptosis, whereas enforced expression of either malic enzyme suppresses senescence. Our findings define physiological functions of malic enzymes, demonstrate a positive-feedback mechanism that sustains p53 activation, and reveal a connection between metabolism and senescence mediated by p53.

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Figure 1: p53 represses the expression of malic enzymes.
Figure 2: ME1 and ME2 influence NADPH production, lipid production and glutaminolysis.
Figure 3: A role for malic enzymes in suppressing p53-mediated senescence.
Figure 4: Mechanisms of p53 activation induced by malic enzyme downregulation and a role of malic enzymes in tumour growth.

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References

  1. Campisi, J. & d’Adda di Fagagna, F. Cellular senescence: when bad things happen to good cells. Nature Rev. Mol. Cell Biol. 8, 729–740 (2007)

    Article  CAS  Google Scholar 

  2. Vousden, K. H. & Prives, C. Blinded by the light: the growing complexity of p53. Cell 137, 413–431 (2009)

    Article  CAS  Google Scholar 

  3. Ben-Porath, I. & Weinberg, R. A. The signals and pathways activating cellular senescence. Int. J. Biochem. Cell Biol. 37, 961–976 (2005)

    Article  CAS  Google Scholar 

  4. Jiang, P. et al. p53 regulates biosynthesis through direct inactivation of glucose-6-phosphate dehydrogenase. Nature Cell Biol. 13, 310–316 (2011)

    Article  CAS  Google Scholar 

  5. Hsu, R. Y. Pigeon liver malic enzyme. Mol. Cell. Biochem. 43, 3–26 (1982)

    Article  CAS  Google Scholar 

  6. Chang, G. G. & Tong, L. Structure and function of malic enzymes, a new class of oxidative decarboxylases. Biochemistry 42, 12721–12733 (2003)

    Article  CAS  Google Scholar 

  7. Pongratz, R. L., Kibbey, R. G., Shulman, G. I. & Cline, G. W. Cytosolic and mitochondrial malic enzyme isoforms differentially control insulin secretion. J. Biol. Chem. 282, 200–207 (2007)

    Article  CAS  Google Scholar 

  8. Riley, T., Sontag, E., Chen, P. & Levine, A. Transcriptional control of human p53-regulated genes. Nature Rev. Mol. Cell Biol. 9, 402–412 (2008)

    Article  CAS  Google Scholar 

  9. Murphy, M. et al. Transcriptional repression by wild-type p53 utilizes histone deacetylases, mediated by interaction with mSin3a. Genes Dev. 13, 2490–2501 (1999)

    Article  CAS  Google Scholar 

  10. Wellen, K. E. et al. ATP-citrate lyase links cellular metabolism to histone acetylation. Science 324, 1076–1080 (2009)

    Article  ADS  CAS  Google Scholar 

  11. Ferbeyre, G. et al. PML is induced by oncogenic ras and promotes premature senescence. Genes Dev. 14, 2015–2027 (2000)

    CAS  PubMed  PubMed Central  Google Scholar 

  12. Pearson, M. et al. PML regulates p53 acetylation and premature senescence induced by oncogenic Ras. Nature 406, 207–210 (2000)

    Article  ADS  CAS  Google Scholar 

  13. Brady, C. A. et al. Distinct p53 transcriptional programs dictate acute DNA-damage responses and tumor suppression. Cell 145, 571–583 (2011)

    Article  CAS  Google Scholar 

  14. Serrano, M., Lin, A. W., McCurrach, M. E., Beach, D. & Lowe, S. W. Oncogenic ras provokes premature cell senescence associated with accumulation of p53 and p16INK4a. Cell 88, 593–602 (1997)

    Article  CAS  Google Scholar 

  15. Wei, W., Hemmer, R. M. & Sedivy, J. M. Role of p14ARF in replicative and induced senescence of human fibroblasts. Mol. Cell. Biol. 21, 6748–6757 (2001)

    Article  CAS  Google Scholar 

  16. Jones, R. G. et al. AMP-activated protein kinase induces a p53-dependent metabolic checkpoint. Mol. Cell 18, 283–293 (2005)

    Article  CAS  Google Scholar 

  17. Blättler, S. M., Rencurel, F., Kaufmann, M. R. & Meyer, U. A. In the regulation of cytochrome P450 genes, phenobarbital targets LKB1 for necessary activation of AMP-activated protein kinase. Proc. Natl Acad. Sci. USA 104, 1045–1050 (2007)

    Article  ADS  Google Scholar 

  18. Wasilenko, W. J. & Marchok, A. C. Malic enzyme and malate dehydrogenase activities in rat tracheal epithelial cells during the progression of neoplasia. Cancer Lett. 28, 35–42 (1985)

    Article  CAS  Google Scholar 

  19. Sauer, L. A., Dauchy, R. T., Nagel, W. O. & Morris, H. P. Mitochondrial malic enzymes. Mitochondrial NAD(P)+-dependent malic enzyme activity and malate-dependent pyruvate formation are progression-linked in Morris hepatomas. J. Biol. Chem. 255, 3844–3848 (1980)

    CAS  PubMed  Google Scholar 

  20. Nagel, W. O., Dauchy, R. T. & Sauer, L. A. Mitochondrial malic enzymes. An association between NAD(P)+-dependent malic enzyme and cell renewal in Sprague-Dawley rat tissues. J. Biol. Chem. 255, 3849–3854 (1980)

    CAS  PubMed  Google Scholar 

  21. Braig, M. et al. Oncogene-induced senescence as an initial barrier in lymphoma development. Nature 436, 660–665 (2005)

    Article  ADS  CAS  Google Scholar 

  22. Chen, Z. et al. Crucial role of p53-dependent cellular senescence in suppression of Pten-deficient tumorigenesis. Nature 436, 725–730 (2005)

    Article  ADS  CAS  Google Scholar 

  23. Xue, W. et al. Senescence and tumour clearance is triggered by p53 restoration in murine liver carcinomas. Nature 445, 656–660 (2007)

    Article  CAS  Google Scholar 

  24. Ventura, A. et al. Restoration of p53 function leads to tumour regression in vivo. Nature 445, 661–665 (2007)

    Article  CAS  Google Scholar 

  25. Li, T. et al. Tumor suppression in the absence of p53-mediated cell-cycle arrest, apoptosis, and senescence. Cell 149, 1269–1283 (2012)

    Article  CAS  Google Scholar 

  26. Brummelkamp, T. R., Bernards, R. & Agami, R. A system for stable expression of short interfering RNAs in mammalian cells. Science 296, 550–553 (2002)

    Article  ADS  CAS  Google Scholar 

  27. Ventura, A. et al. Cre-lox-regulated conditional RNA interference from transgenes. Proc. Natl Acad. Sci. USA 101, 10380–10385 (2004)

    Article  ADS  CAS  Google Scholar 

  28. Godar, S. et al. Growth-inhibitory and tumor-suppressive functions of p53 depend on its repression of CD44 expression. Cell 134, 62–73 (2008)

    Article  CAS  Google Scholar 

  29. Jiang, P., Du, W., Heese, K. & Wu, M. The Bad guy cooperates with good cop p53: Bad is transcriptionally up-regulated by p53 and forms a Bad/p53 complex at the mitochondria to induce apoptosis. Mol. Cell. Biol. 26, 9071–9082 (2006)

    Article  CAS  Google Scholar 

  30. Guay, C., Madiraju, S. R., Aumais, A., Joly, E. & Prentki, M. A role for ATP-citrate lyase, malic enzyme, and pyruvate/citrate cycling in glucose-induced insulin secretion. J. Biol. Chem. 282, 35657–35665 (2007)

    Article  CAS  Google Scholar 

  31. Millard, P., Letisse, F., Sokol, S. & Portais, J. C. IsoCor: correcting MS data in isotope labeling experiments. Bioinformatics 28, 1294–1296 (2012)

    Article  CAS  Google Scholar 

  32. Cossarizza, A. et al. Simultaneous analysis of reactive oxygen species and reduced glutathione content in living cells by polychromatic flow cytometry. Nature Protocols 4, 1790–1797 (2009)

    Article  CAS  Google Scholar 

  33. Zhang, J. et al. AFAP-110 is overexpressed in prostate cancer and contributes to tumorigenic growth by regulating focal contacts. J. Clin. Invest. 117, 2962–2973 (2007)

    Article  CAS  Google Scholar 

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Acknowledgements

We thank M. J. Birnbaum, B. Vogelstein, W. El-Deiry and M. Lazar for reagents; M. J. Bennett, S. Patel, A. Stonestrom and M. Brewer for technical assistance; and A. Stonestrom for help with manuscript preparation. This work was supported by grants from the National Institutes of Health (CA088868) and the US Department of Defense (W81XWH-10-1-0468) to X.Y.

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P.J., W.D. and X.Y. designed the study, interpreted the data and wrote the manuscript. P.J. and W.D. performed the experiments. K.E.W. helped with the metabolic studies and data interpretation. A.M. designed the glutaminolytic flux procedure and performed the experiment with the help from P.J.

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Correspondence to Xiaolu Yang.

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The authors declare no competing financial interests.

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Jiang, P., Du, W., Mancuso, A. et al. Reciprocal regulation of p53 and malic enzymes modulates metabolism and senescence. Nature 493, 689–693 (2013). https://doi.org/10.1038/nature11776

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