New insights into molecular changes in skeletal muscle aging and disease: Differential alternative splicing and senescence

https://doi.org/10.1016/j.mad.2021.111510Get rights and content
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Highlights

  • Muscle fibers positive for senescence markers Tmem158 and Cdkn1a exhibit differential alternative splicing.

  • Differential alternative splicing plays an important role in sarcopenia and complements common molecular mechanisms in aging and disease.

  • We suggest extending the hallmarks of DM & aging by adding “dysregulation of alternative splicing”.

Abstract

Progressive loss of muscle mass and function due to muscle fiber atrophy and loss in the elderly and chronically ill is now defined as sarcopenia. It is a major contributor to loss of independence, disability, need of long-term care as well as overall mortality. Sarcopenia is a heterogenous disease and underlying mechanisms are not completely understood. Here, we newly identified and used Tmem158, alongside Cdkn1a, as relevant senescence and denervation markers (SDMs), associated with muscle fiber atrophy. Subsequent application of laser capture microdissection (LCM) and RNA analyses revealed age- and disease-associated differences in gene expression and alternative splicing patterns in a rodent sarcopenia model. Of note, genes exhibiting such differential alternative splicing (DAS) are mainly involved in the contractile function of the muscle. Many of these splicing events are also found in a mouse model for myotonic dystrophy type 1 (DM1), underscoring the premature aging phenotype of this disease. We propose to add differential alternative splicing to the hallmarks of aging.

Abbreviations

SDMs
senescence and denervation markers
LCM
laser capture microdissection
SCN
sciatic nerve crush
DM
myotonic dystrophy
DM1
myotonic dystrophy type 1
DGE
differential gene expression
DAS
differential alternative splicing
RT-PCR
reverse transcription polymerase chain reaction
SEM
standard error of the mean
CSA
cross-sectional area
FPKM
Fragments Per Kilobase of transcript per Million mapped reads (RNA-seq analysis)
CPM
Counts Per Million mapped reads (RNA-seq analysis)
RQ
relative quantification (RT-PCR)
GO
gene ontology

Keywords

Cellular senescence
Sarcopenia
Myotonic dystrophy type 1
Differential alternative splicing
Laser capture microdissection

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