A Hierarchical Regulatory Landscape during the Multiple Stages of EMT

Highlights

• A large number of TFs and miRNAs are critical for EMT to occur

• EMT involves a temporal hierarchy of transcriptional networks

• Reciprocal networks between TFs and between TFs and miRNAs regulates EMT

• These analyses serve as a resource for exploring gene regulation during EMT

Summary

Epithelial-mesenchymal transition (EMT) enables cells to gain migratory and invasive features underlined by major transcriptional and epigenetic reprogramming. However, most studies have focused on the endpoints of the EMT process, and the epistatic hierarchy of the transcriptional networks underlying EMT has remained elusive. We have used a siRNA-based, functional high-content microscopy screen to identify 46 (co)transcription factors ((co)TFs) and 13 miRNAs critically required for EMT in normal murine mammary gland (NMuMG) cells. We compared dynamic gene expression during EMT kinetics and used functional perturbation of critical (co)TFs and miRNAs to identify groups and networks of EMT genes. Computational analysis as well as functional validation experiments revealed interaction networks between TFs and miRNAs and delineated the hierarchical and functional interactions of multiple EMT regulatory networks in NMuMG cells.