Abstract
The agents driving the divergence and speciation of free-living microbial populations are still largely unknown. We investigated the dinoflagellate morphospecies Scrippsiella hangoei and Peridinium aciculiferum, which abound in the Baltic Sea and in northern temperate lakes, respectively. Electron microscopy analyses showed significant interspecific differences in the external cellular morphology, but a similar plate pattern in the characteristic dinoflagellate armor. Experimentally, S. hangoei grew in a wide range of salinities (0–30), whereas P. aciculiferum only grew in low salinities (0–3). Despite these phenotypic differences and the habitat segregation, molecular analyses showed identical ribosomal DNA sequences (ITS1, ITS2, 5.8S, SSU, and partial LSU) for both morphospecies. Yet, a strong interspecific genetic isolation was indicated by amplified fragment length polymorphism (F ST = 0.76) and cytochrome b (cob) sequence divergence (∼1.90%). Phylogenetic reconstructions based on ribosomal (SSU, LSU) and mitochondrial (cob) DNA indicated a recent marine ancestor for P. aciculiferum. In conclusion, we suggest that the lacustrine P. aciculiferum and the marine-brackish S. hangoei diverged very recently, after a marine–freshwater transition that exposed the ancestral populations to different selective pressures. This hypothetical scenario agrees with mounting data indicating a significant role of natural selection in the divergence of free-living microbes, despite their virtually unrestricted dispersal capabilities. Finally, our results indicate that identical ITS rDNA sequences do not necessarily imply the same microbial species, as commonly assumed.
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Adachi, M, Sako, Y, Ishida, Y (1994) Restriction-fragment-length-polymorphism of ribosomal DNA internal transcribed spacer and 5.8s-regions in Japanese Alexandrium species (Dinophyceae). J Phycol 30: 857–863
Anderson, JR, Bentley, S, Irwin, JAG, Mackie, JM, Neate, S, Pattemore, JA (2004) Characterization of Rhizoctonia solani isolates causing root canker of lucerne in Australia. Australas Plant Pathol 33: 241–247
Avise, JC (2004) Molecular Markers, Natural History, and Evolution, 2nd ed. Sinauer Associates, MA
Baas-Becking, LGM (1934) Geobiologie of Inleiding Tot De Milieukunde, Serie 18/19. Van Stockum's Gravenhange, The Hague, The Netherlands
Balech, E (1963) Dos dinoflagelados de una laguna salobre de la Argentina. Not Mus La Plata 20: 111–123
Bensch, S, Perez-Tris, J, Waldenstrom, J, Hellgren, O (2004) Linkage between nuclear and mitochondrial DNA sequences in avian malaria parasites: multiple cases of cryptic speciation? Evolution 58: 1617–1621
Berry, JP, Reece, KS, Rein, KS, Baden, DG, Haas, LW, Ribeiro, WL, Shields, JD, Snyder, RV, Vogelbein, WK, Gawley, RE (2002) Are Pfiesteria species toxicogenic? Evidence against production of ichthyotoxins by Pfiesteria shumwayae. Proc Natl Acad Sci USA 99: 10970–10975
Bjorck, S (1995) A review of the history of the Baltic Sea, 13.0–8.0 Ka Bp. Quatern Int 27: 19–40
Bourelly, P (1968) Notes sur les Péridiniens d'eau douce. Protistologica 4: 5–14
Casamatta, DA, Vis, ML, Sheath, RG (2003) Cryptic species in cyanobacterial systematics: a case study of Phormidium retzii (Oscillatoriales) using RAPD molecular markers and 16S rDNA sequence data. Aquat Bot 77: 295–309
Cavalier-Smith, T (2004) Only six kingdoms of life. Proc R Soc Lond B Biol 271 :1251–1262
Connell, LB (2000) Nuclear ITS region of the alga Heterosigma akashiwo (Chromophyta: Raphidophyceae) is identical in isolates from Atlantic and Pacific basins. Mar Biol 136: 953–960
Coyne, JA, Orr, HA (2004) Speciation. Sinauer Associates, MA
Darling, KF, Wade, CM, Stewart, IA, Kroon, D, Dingle, R, Brown, AJL (2000) Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of planktonic foraminifers. Nature 405: 43–47
Dawson, MN, Hamner, WM (2005) Rapid evolutionary radiation of marine zooplankton in peripheral environments. Proc Natl Acad Sci USA 102: 9235–9240
Doebeli, M, Dieckmann, U, Metz, JAJ, Tautz, D (2005) What we have also learned: adaptive speciation is theoretically plausible. Evolution 59: 691–695
Edvardsen, B, Shalchian-Tabrizi, K, Jakobsen, KS, Medlin, LK, Dahl, E, Brubak, S, Paasche, E (2003) Genetic variability and molecular phylogeny of Dinophysis species (Dinophyceae) from Norwegian waters inferred from single cell analyses of rDNA. J Phycol 39: 395–408
Ekman, P, Fries, M (1970) Studies of sediments from Lake Erken, Eastern Central Sweden. GFF 92: 214–224
Fenchel, T (1993) There are more small than large species. Oikos 68: 375–378
Finlay, BJ (2002) Global dispersal of free-living microbial eukaryote species. Science 296: 1061–1063
Finlay, BJ (2004) Protist taxonomy: an ecological perspective. Philos Trans R Soc, B 359: 599–610
Finlay, BJ, Clarke, KJ (1999) Ubiquitous dispersal of microbial species. Nature 400: 828
Fukuyo, Y, Hideaki, T, Chihara, M, Matsuoka, K (1990) Red Tide Organisms in Japan—An Illustrated Taxonomic Guide. U Rokakuho Publ, Tokyo
Gottschling, M, Keupp, H, Plotner, J, Knop, R, Willems, H, Kirsch, M (2005) Phylogeny of calcareous dinoflagellates as inferred from ITS and ribosomal sequence data. Mol Phylogenet Evol 36: 444–455.
Guillard, RR, Lorenzen, CJ (1972) Yellow-green algae with Chlorophyllide C. J Phycol 8: 10–14
Guillard, RR, Ryther, JH (1962) Studies of marine planktonic diatoms .1. Cyclotella nana Hustedt, and Detonula confervacea (Cleve) Gran. Can J Microbiol 8: 229–239
Hall, TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95–98
Hendry, AP, Wenburg, JK, Bentzen, P, Volk, EC, Quinn, TP (2000) Rapid evolution of reproductive isolation in the wild: evidence from introduced salmon. Science 290: 516–518
Hewitt, G (2000) The genetic legacy of the Quaternary ice ages. Nature 405: 907–913
Hewitt, GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58: 247–276
Horiguchi, T, Pienaar, RN (1988) Ultrastructure of a new sand-dwelling dinoflagellate, Scrippsiella arenicola sp. nov. J Phycol 24: 426–438
Huelsenbeck, JP, Ronquist, F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755
Kauserud, H, Stensrud, O, Decock, C, Shalchian-Tabrizi, K, Schumacher, T (2006) Multiple gene genealogies and AFLPs suggest cryptic speciation and long-distance dispersal in the basidiomycete Serpula himantioides (Boletales). Mol Ecol 15: 421–431
Kim, E, Wilcox, L, Graham, L, Graham, J (2004) Genetically distinct populations of the dinoflagellate Peridinium limbatum in neighboring Northern Wisconsin lakes. Microbial Ecol 48: 521–527
Kisselev, IA (1950) Pantzyrnye Zhgutikonostsy (Dinoflagellata) Morey i Presnovodnykh vod SSSR. Opredelitel po faune SSSR 33, Akad Nauka SSSR, Moskva
Kremp, A, Elbrachter, M, Schweikert, M, Wolny, JL, Gottschling, M (2005) Woloszynskia halophila (Biecheler) comb. nov.: a bloom-forming cold-water dinoflagellate co-occurring with Scrippsiella hangoei (Dinophyceae) in the Baltic Sea. J Phycol 41: 629–642
Larsen, J, Kuosa, H, Ikävalko, J, Kivi, K, Hällfors, S (1995) A redescription of Scrippsiella-hangoei (Schiller) comb. nov.—a red tide dinoflagellate from the Northern Baltic. Phycologia 34: 135–144
Leblond, JD, Chapman, PJ (2002) A survey of the sterol composition of the marine dinoflagellates Karenia brevis, Karenia mikimotoi, and Karlodinium micrum distribution of sterols within other members of the class Dinophyceae. J Phycol 38: 670–682
Lee, CE, Bell, MA (1999) Causes and consequences of recent freshwater invasions by saltwater animals. Trends Ecol Evol 14: 284–288
Lefèvre, M (1932) Monographie des espèces d'eau douce du genre Peridinium. Ehrb Arch Bot 2: 1–208
Lindemann, E (1919) Untersuchungen über süsswasserperidineen und ihre variationsformen. Arch Protistenk 39: 209–262
Lopez-Garcia, P, Rodriguez-Valera, F, Pedros-Alio, C, Moreira, D (2001) Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton. Nature 409: 603–607
Loret, P, Tengs, T, Villareal, TA, Singler, H, Richardson, B, McGuire, P, Morton, S, Busman, M, Campbell, L (2002) No difference found in ribosomal DNA sequences from physiologically diverse clones of Karenia brevis (Dinophyceae) from the Gulf of Mexico. J Plankton Res 24: 735–739
Lynch, M, Milligan, BG (1994) Analysis of population genetic-structure with RAPD markers. Mol Ecol 3: 91–99
Massana, R, DeLong, EF, Pedros-Alio, C (2000) A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl Environ Microbiol 66: 1777–1787
McDonald, JH, Kreitman, M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652–654
McKinnon, JS, Rundle, HD (2002) Speciation in nature: the three-spine stickleback model systems. Trends Ecol Evol 17: 480–488
Mendelson, TC, Shaw, KL (2005) Rapid speciation in an arthropod. Nature 433: 375–376
Miller, MP (1997) Tools for Population Genetic Analysis (TFPGA) 1.3: a Windows program for the analysis of allozyme and molecular population genetic data. Distributed by the author
Miscampbell, AE, Lankester, MW, Adamson, ML (2004) Molecular and morphological variation within swim bladder nematodes, Cystidicola spp. Can J Fish Aquat Sci 61: 1143–1152
Montresor, M (1995) Scrippsiella ramonii sp nov (Peridiniales, Dinophyceae), a marine dinoflagellate producing a calcareous resting cyst. Phycologia 34: 87–91
Montresor, M, Lovejoy, C, Orsini, L, Procaccini, G, Roy, S (2003) Bipolar distribution of the cyst-forming dinoflagellate Polarella glacialis. Polar Biol 26: 186–194
Montresor, M, Sgrosso, S, Procaccini, G, Kooistra, WHCF (2003) Intraspecific diversity in Scrippsiella trochoidea (Dinophyceae): evidence for cryptic species. Phycologia 42: 56–70
Montresor, M, Zingone, A (1988) Scrippsiella precaria sp nov (Dinophyceae), a marine dinoflagellate from the Gulf of Naples. Phycologia 27: 387–394
Moon-van der Staay, SY, De Wachter, R, Vaulot, D (2001) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607–610
Muir, G, Fleming, CC, Schlotterer, C (2001) Three divergent rDNA clusters predate the species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L. Mol Biol Evol 18: 112–119
Nei, M (1972) Genetic distance between populations. Am Nat 106: 283–292
Niemi, Å (1975) Ecology of phytoplankton in the Tvärminne area, SW coast of Finland: II. Primary production and environmental conditions in the archipelago and the sea zone. Acta Bot Fenn 105: 1–73
Orr, MR, Smith, TB (1998) Ecology and speciation. Trends Ecol Evol 13: 502–506
Ostenfeld, CH, Wesenberg-Lund, C (1906) A regular fortnightly exploration of the phytoplankton of the two Icelandic lakes, Thingvallavatn and Myvatn. Proc R Soc Edinburgh 25: 1092–1176
Pace, NR (1997) A molecular view of microbial diversity and the biosphere. Science 276: 734–740
Page, RDM (1996) Treeview: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357–358
Papke, RT, Ramsing, NB, Bateson, MM, Ward, DM (2003) Geographical isolation in hot spring cyanobacteria. Environ Microbiol 5 :650–659
Papke, RT, Ward, DM (2004) The importance of physical isolation to microbial diversification. FEMS Microbiol Ecol 48: 293–303
Pearce, I, Hallegraeff, GM (2004) Genetic affinities, ecophysiology and toxicity of Prorocentrum playfairii and P. foveolata (Dinophyceae) from Tasmanian freshwaters. Phycologia 43: 271–281
Pfiester, LA, Anderson, DM (1987) Dinoflagellate reproduction. In: Taylor, FJR (Eds.) The Biology of Dinoflagellates. Botanical Monographs, vol. 21, Blackwell, Oxford, pp 611–648
Popovsky, J, Pfiester, LA (1990) Dinophyceae. In: Ettl, H, Gerloff, J, Heynig, H, Mollenhauer, D (Eds.) Süßwasserflora von Mitteleuropa, vol. 6, Gustav Fischer Verlag, Stuttgart
Posada, D, Crandall, KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817–818
Rainey, PB, Buckling, A, Kassen, R, Travisano, M (2000) The emergence and maintenance of diversity: insights from experimental bacterial populations. Trends Ecol Evol 15: 243–247
Rainey, PB, Travisano, M (1998) Adaptive radiation in a heterogeneous environment. Nature 394: 69–72
Rengefors, K (1998) Seasonal succession of dinoflagellates coupled to the benthic cyst dynamics in Lake Erken, Sweden. Arch Hydrobiol 51: 123–141
Riseberg, LH, Wendel, JF (1993) Introgression and its consequences. In: Harrison, RG (Eds.) Hybrid Zones and the Evolutionary Process. Oxford University Press, New York, pp 70–109
Rozas, J, Sanchez-DelBarrio, JC, Messeguer, X, Rozas, R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496–2497
Rundle, HD, Nagel, L, Boughman, JW, Schluter, D (2000) Natural selection and parallel speciation in sympatric sticklebacks. Science 287: 306–308
Rynearson, TA, Armbrust, EV (2000) DNA fingerprinting reveals extensive genetic diversity in a field population of the centric diatom Ditylum brightwellii. Limnol Oceanogr 45: 1329–1340
Rynearson, TA, Armbrust, EV (2004) Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii (Bacillariophyceae). J Phycol 40: 34–43
Saez, AG, Probert, I, Geisen, M, Quinn, P, Young, JR, Medlin, LK (2003) Pseudo-cryptic speciation in coccolithophores. Proc Natl Acad Sci USA 100: 7163–7168
Saldarriaga, JF, Taylor, FJR, Keeling, PJ, Cavalier-Smith, T (2001) Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements. J Mol Evol 53: 204–213
Schmidt, LE, Hansen, PJ (2001) Allelopathy in the prymnesiophyte Chrysochromulina polylepis: effect of cell concentration, growth phase and pH. Mar Ecol Prog Ser 216: 67–81
Scholin, CA, Herzog, M, Sogin, M, Anderson, DM (1994) Identification of group-specific and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae): II. Sequence analysis of a fragment of the LSU rRNA gene. J Phycol 30: 999–1011
Smayda, TJ (1997) Harmful algal blooms: their ecophysiology and general relevance to phytoplankton blooms in the sea. Limnol Oceanogr 42: 1137–1153
Steidinger, KA, Balech, E (1977) Scrippsiella subsalsa (Ostenfeld) comb nov (Dinophyceae) with a discussion on Scrippsiella. Phycologia 16: 69–73
Taylor, FJR (1987) The biology of dinoflagellates. Botanical Monographs, vol. 21. Blackwell, Oxford
Tengs, T, Bowers, HA, Glasgow, HB, Burkholder, JM, Oldach, DW (2003) Identical ribosomal DNA sequence data from Pfiesteria piscicida (Dinophyceae) isolates with different toxicity phenotypes. Environ Res 93: 88–91
Thompson, JD, Gibson, TJ, Plewniak, F, Jeanmougin, F, Higgins, DG (1997) The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876–4882
Tyler, PA (1996) Endemism in freshwater algae. Hydrobiologia 336: 127–135
Uwe, J, Fensome, RA, Medlin, LK (2003) The application of a molecular clock based on molecular sequences and the fossil record to explain biogeographic distributions within the Alexandrium tamarense “Species Complex” (Dinophyceae). Mol Biol Evol 20: 1015–1027
Vekemans, X (2002) AFLP-SURV v.1.0. Distributed by the author. Laboratoire de Génétique et Ecologie Végétale, Université Libre de Bruxelles, Belgium
von der Heyden, S, Chao, EE, Cavalier-Smith, T (2004) Genetic diversity of goniomonads: an ancient divergence between marine and freshwater species. Eur J Phycol 39: 343–350
von Stosch, HA (1973) Observations on vegetative reproduction and sexual life cycles of two freshwater dinoflagellates Gymnodinium pseudopalustre Schiller and Woloszynkskia apiculata sp. nov. Br Phycol J 8: 105–134
Vos, P, Hogers, R, Bleeker, M, Reijans, M, Vandelee, T, Hornes, M, Frijters, A, Pot, J, Peleman, J, Kuiper, M, Zabeau, M (1995) AFLP—a new technique for DNA-fingerprinting. Nucleic Acids Res 23: 4407–4414
Wetzel, RG (2001) Limnology. Lake and River Ecosystems, 3rd ed. Academic Press, California
Weyhenmeyer, G (1999) Lake Erken: Meteorological, Physical, Chemical and Biological Data and List of Publications from 1933 to 1998. Norr Malma field station report, Evolutionary Biology Centre, Uppsala University http://www.ebc.uu.se/norr.malma/publikationer/Erken%20Data%20Report.pdf)
Whitaker, RJ, Grogan, DW, Taylor, JW (2003) Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301: 976–978
Woloszynska, J (1928) Dinoflagellatae polskiego Baltyku i blot nad Piasnica. Arch Hydrobiol Ryb 3: 153–278
Zhang, H, Bhattacharya, D, Lin, S (2005) Phylogeny of dinoflagellates based on mitochondrial cytochrome b and nuclear small subunit rDNA sequence comparisons. J Phycol 41: 411–420
Acknowledgments
The Swedish Research Council and the SEED project contract, GOCE-CT-2005-003875 (European Commission Directorate General Research), financed this study. We thank S. Bensch for his assistance with AFLP analyses and J. Pérez-Tris for comments on early versions of the manuscript. Dr. C. Luxoro is thanked for methodological help during the initial phase of this work and T. Rolfsen (UiO) for assistance with SEM. Preliminary parts of this work were carried out in D. Anderson's laboratory at Woods Hole. Special thanks to the three anonymous reviewers who have helped to improve this manuscript. Phylogenies were computed in the University of Oslo Bioportal, (http://www.bioportal.uio.no/).
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Logares, R., Rengefors, K., Kremp, A. et al. Phenotypically Different Microalgal Morphospecies with Identical Ribosomal DNA: A Case of Rapid Adaptive Evolution?. Microb Ecol 53, 549–561 (2007). https://doi.org/10.1007/s00248-006-9088-y
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DOI: https://doi.org/10.1007/s00248-006-9088-y