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Import of Proteins into Isolated Yeast Mitochondria

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Book cover Membrane Trafficking

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1270))

Abstract

Mitochondria are essential organelles of eukaryotic cells. The vast majority of mitochondrial proteins is encoded within the nuclear genome and translocated into various mitochondrial compartments after translation in the cytosol as preproteins. Even in rather primitive eukaryotes like yeasts, there are 700–1,000 different proteins that need to be recognized in the cytosol, directed to the protein translocases in the two mitochondrial membranes and sorted to their appropriate mitochondrial subcompartment. In vitro reconstituted import systems have proved to be important tools to study these processes in detail. Using isolated mitochondria and radioactively labeled precursor proteins, it was possible to identify several import machineries and pathways consisting of a large number of components during the last few decades.

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References

  1. Scheffler I (2008) Mitochondria, 2nd edn. Wiley, New York

    Google Scholar 

  2. Rhee HW, Zou P, Udeshi ND, Martell JD, Mootha VK, Carr SA, Ting AY (2013) Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging. Science 339:1328–1331

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  3. Sickmann A, Reinders J, Wagner Y, Joppich C, Zahedi R, Meyer HE, Schonfisch B, Perschil I, Chacinska A, Guiard B, Rehling P, Pfanner N, Meisinger C (2003) The proteome of Saccharomyces cerevisiae mitochondria. Proc Natl Acad Sci U S A 100:13207–13212

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  4. Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, Stahl E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES, Mann M (2003) Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell 115:629–640

    Article  CAS  PubMed  Google Scholar 

  5. Neupert W, Herrmann JM (2007) Translocation of proteins into mitochondria. Annu Rev Biochem 76:723–749

    Article  CAS  PubMed  Google Scholar 

  6. Chacinska A, Koehler CM, Milenkovic D, Lithgow T, Pfanner N (2009) Importing mitochondrial proteins: machineries and mechanisms. Cell 138:628–644

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  7. Endo T, Yamano K (2009) Multiple pathways for mitochondrial protein traffic. Biol Chem 390:723–730

    Article  CAS  PubMed  Google Scholar 

  8. Qiu J, Wenz LS, Zerbes RM, Oeljeklaus S, Bohnert M, Stroud DA, Wirth C, Ellenrieder L, Thornton N, Kutik S, Wiese S, Schulze-Specking A, Zufall N, Chacinska A, Guiard B, Hunte C, Warscheid B, van der Laan M, Pfanner N, Wiedemann N, Becker T (2013) Coupling of mitochondrial import and export translocases by receptor-mediated supercomplex formation. Cell 154:596–608

    Article  CAS  PubMed  Google Scholar 

  9. Hewitt VL, Heinz E, Shingu-Vazquez M, Qu Y, Jelicic B, Lo TL, Beilharz TH, Dumsday G, Gabriel K, Traven A, Lithgow T (2012) A model system for mitochondrial biogenesis reveals evolutionary rewiring of protein import and membrane assembly pathways. Proc Natl Acad Sci U S A 109:E3358–E3366

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  10. Opalinska M, Meisinger C (2014) Mitochondrial protein import under kinase surveillance. Microbial Cell 1:51–57

    Article  Google Scholar 

  11. Vögtle FN, Wortelkamp S, Zahedi RP, Becker D, Leidhold C, Gevaert K, Kellermann J, Voos W, Sickmann A, Pfanner N, Meisinger C (2009) Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability. Cell 139:428–439

    Article  PubMed  Google Scholar 

  12. von Heijne G (1986) Mitochondrial targeting sequences may form amphiphilic helices. EMBO J 5:1335–1342

    Google Scholar 

  13. Guda C, Fahy E, Subramaniam S (2004) MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics 20:1785–1794

    Article  CAS  PubMed  Google Scholar 

  14. Claros MG (1995) MitoProt, a Macintosh application for studying mitochondrial proteins. Comput Appl Biosci 11:441–447

    CAS  PubMed  Google Scholar 

  15. Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2:953–971

    Article  CAS  PubMed  Google Scholar 

  16. Small I, Peeters N, Legeai F, Lurin C (2004) Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics 4:1581–1590

    Article  CAS  PubMed  Google Scholar 

  17. Hasson SA, Damoiseaux R, Glavin JD, Dabir DV, Walker SS, Koehler CM (2010) Substrate specificity of the TIM22 mitochondrial import pathway revealed with small molecule inhibitor of protein translocation. Proc Natl Acad Sci U S A 107:9578–9583

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  18. Wrobel L, Trojanowska A, Sztolsztener ME, Chacinska A (2013) Mitochondrial protein import: Mia40 facilitates Tim22 translocation into the inner membrane of mitochondria. Mol Biol Cell 24:543–554

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  19. Kovermann P, Truscott KN, Guiard B, Rehling P, Sepuri NB, Muller H, Jensen RE, Wagner R, Pfanner N (2002) Tim22, the essential core of the mitochondrial protein insertion complex, forms a voltage-activated and signal-gated channel. Mol Cell 9:363–373

    Article  CAS  PubMed  Google Scholar 

  20. Peixoto PM, Grana F, Roy TJ, Dunn CD, Flores M, Jensen RE, Campo ML (2007) Awaking TIM22, a dynamic ligand-gated channel for protein insertion in the mitochondrial inner membrane. J Biol Chem 282:18694–18701

    Article  CAS  PubMed  Google Scholar 

  21. Herrmann JM, Riemer J (2012) Mitochondrial disulfide relay: redox-regulated protein import into the intermembrane space. J Biol Chem 287:4426–4433

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  22. Banci L, Bertini I, Cefaro C, Ciofi-Baffoni S, Gallo A, Martinelli M, Sideris DP, Katrakili N, Tokatlidis K (2009) Mia40 is an oxidoreductase that catalyzes oxidative protein folding in mitochondria. Nat Struct Mol Biol 16:198–206

    Article  CAS  PubMed  Google Scholar 

  23. Kawano S, Yamano K, Naoe M, Momose T, Terao K, Nishikawa S, Watanabe N, Endo T (2009) Structural basis of yeast Tim40/Mia40 as an oxidative translocator in the mitochondrial intermembrane space. Proc Natl Acad Sci U S A 106:14403–14407

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  24. Peleh V, Riemer J, Dancis A, Herrmann JM (2014) Protein oxidation in the intermembrane space of mitochondria is substrate-specific rather than general. Microbial Cell 1:70–80

    Article  Google Scholar 

  25. Fischer M, Horn S, Belkacemi A, Kojer K, Petrungaro C, Habich M, Ali M, Kuttner V, Bien M, Kauff F, Dengjel J, Herrmann JM, Riemer J (2013) Protein import and oxidative folding in the mitochondrial intermembrane space of intact mammalian cells. Mol Biol Cell 24:2160–2170

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  26. Young JC, Hoogenraad NJ, Hartl FU (2003) Molecular chaperones Hsp90 and Hsp70 deliver preproteins to the mitochondrial import receptor Tom70. Cell 112:41–50

    Article  CAS  PubMed  Google Scholar 

  27. Sinha D, Joshi N, Chittoor B, Samji P, D’Silva P (2010) Role of Magmas in protein transport and human mitochondria biogenesis. Hum Mol Genet 19:1248–1262

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  28. Pelham HRB, Jackson RJ (1976) An efficient mRNA-dependent translation system from reticulocyte lysates. Eur J Biochem 67:247–256

    Article  CAS  PubMed  Google Scholar 

  29. Rassow J, Guiard B, Wienhues U, Herzog V, Hartl F-U, Neupert W (1989) Translocation arrest by reversible folding of a precursor protein imported into mitochondria. A means to quantitate translocation contact sites. J Cell Biol 109:1421–1428

    Article  CAS  PubMed  Google Scholar 

  30. Becker K, Guiard B, Rassow J, Söllner T, Pfanner N (1992) Targeting of a chemically pure preprotein to mitochondria does not require the addition of a cytosolic signal recognition factor. J Biol Chem 267:5637–5643

    CAS  PubMed  Google Scholar 

  31. Lutz T, Neupert W, Herrmann JM (2003) Import of small Tim proteins into the mitochondrial intermembrane space. EMBO J 22:4400–4408

    Article  PubMed Central  CAS  PubMed  Google Scholar 

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Acknowledgments

This work was supported by grants of the Deutsche Forschungsgemeinschaft and the Landesschwerpunkt BioComp of Rheinland-Pfalz.

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Correspondence to Johannes M. Herrmann .

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Peleh, V., Ramesh, A., Herrmann, J.M. (2015). Import of Proteins into Isolated Yeast Mitochondria. In: Tang, B. (eds) Membrane Trafficking. Methods in Molecular Biology, vol 1270. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2309-0_3

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  • DOI: https://doi.org/10.1007/978-1-4939-2309-0_3

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2308-3

  • Online ISBN: 978-1-4939-2309-0

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