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Homo-FRET Imaging Highlights the Nanoscale Organization of Cell Surface Molecules

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Book cover Advanced Fluorescence Microscopy

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1251))

Abstract

Several models have been proposed to understand the structure and organization of the plasma membrane in living cells. Predicated on equilibrium thermodynamic principles, the fluid-mosaic model of Singer and Nicholson and the model of lipid domains (or membrane rafts) are dominant models, which account for a fluid bilayer and functional lateral heterogeneity of membrane components, respectively. However, the constituents of the membrane and its composition are not maintained by equilibrium mechanisms. Indeed, the living cell membrane is a steady state of a number of active processes, namely, exocytosis, lipid synthesis and transbilayer flip-flop, and endocytosis. In this active milieu, many lipid constituents of the cell membrane exhibit a nanoscale organization that is also at odds with passive models based on chemical equilibrium. Here we provide a detailed description of microscopy and cell biological methods that have served to provide valuable information regarding the nature of nanoscale organization of lipid components in a living cell.

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References

  1. Schermelleh L, Heintzmann R, Leonhardt H (2010) A guide to super-resolution fluorescence microscopy. J Cell Biol 190:165–175

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  2. Krishnan RV, Varma R, Mayor S (2001) Fluorescence methods to probe nanometer-scale organization of molecules in living cell membranes. J Fluoresc 11:211–226

    Article  CAS  Google Scholar 

  3. Jares-Erijman EA, Jovin TM (2003) FRET imaging. Nat Biotechnol 21:1387–1395

    Article  CAS  PubMed  Google Scholar 

  4. Rao M, Mayor S (2005) Use of Forster’s resonance energy transfer microscopy to study lipid rafts. Biochim Biophys Acta 1746:221–233

    Article  CAS  PubMed  Google Scholar 

  5. Agranovich V, Galanin M (1982) Electronic excitation energy transfer in condensed matter. North-Holland Publishing, Amsterdam

    Google Scholar 

  6. Stryer L (1978) Fluorescence energy transfer as a spectroscopic ruler. Annu Rev Biochem 47:819–846

    Article  CAS  PubMed  Google Scholar 

  7. Lakowicz JR (2006) Principles of fluorescence spectroscopy, 3rd edn. Springer, New York

    Book  Google Scholar 

  8. Mukherjee S, Soe TT, Maxfield FR (1999) Endocytic sorting of lipid analogues differing solely in the chemistry of their hydrophobic tails. J Cell Biol 144:1271–1284

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  9. Sabharanjak S, Sharma P, Parton RG et al (2002) GPI-anchored proteins are delivered to recycling endosomes via a distinct cdc42-regulated, clathrin-independent pinocytic pathway. Dev Cell 2:411–423

    Article  CAS  PubMed  Google Scholar 

  10. Varma R, Mayor S (1998) GPI-anchored proteins are organized in submicron domains at the cell surface. Nature 394:798–801

    Article  CAS  PubMed  Google Scholar 

  11. Martin OC, Pagano RE (1994) Internalization and sorting of a fluorescent analogue of glucosylceramide to the Golgi apparatus of human skin fibroblasts: utilization of endocytic and nonendocytic transport mechanisms. J Cell Biol 125:769–781

    Article  CAS  PubMed  Google Scholar 

  12. Spector AA, John K, Fletcher JE (1969) Binding of long-chain fatty acids to bovine serum albumin. J Lipid Res 10:56–67

    CAS  PubMed  Google Scholar 

  13. Eggeling C, Ringemann C, Medda R et al (2009) Direct observation of the nanoscale dynamics of membrane lipids in a living cell. Nature 457:1159–1162

    Article  CAS  PubMed  Google Scholar 

  14. Koivusalo M, Jansen M, Somerharju P et al (2007) Endocytic trafficking of sphingomyelin depends on its acyl chain length. Mol Biol Cell 18:5113–5123

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  15. Ghosh S, Saha S, Goswami D et al (2012) Dynamic imaging of homo-FRET in live cells by fluorescence anisotropy microscopy. Methods Enzymol 505:291–327

    Article  CAS  PubMed  Google Scholar 

  16. Varma R, Mayor S (2006) Homo-FRET measurements to investigate molecular-scale organization of proteins in living cells. In: Stephens D (ed) Cell imaging: methods express. Scion Publishing Limited, UK, pp 247–268

    Google Scholar 

  17. Pawley JB (2006) Handbook of biological confocal microscopy, 3rd edn. Springer, New York

    Book  Google Scholar 

  18. Sharma P, Varma R, Sarasij RC et al (2004) Nanoscale organization of multiple GPI-anchored proteins in living cell membranes. Cell 116:577–589

    Article  CAS  PubMed  Google Scholar 

  19. Bader AN, Hofman EG, Voortman J et al (2009) Homo-FRET imaging enables quantification of protein cluster sizes with subcellular resolution. Biophys J 97:2613–2622

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  20. Hofman EG, Bader AN, Voortman J et al (2010) Ligand-induced EGF receptor oligomerization is kinase-dependent and enhances internalization. J Biol Chem 285:39481–39489

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  21. Fujita M, Kinoshita T (2012) GPI-anchor remodeling: potential functions of GPI-anchors in intracellular trafficking and membrane dynamics. Biochim Biophys Acta 1821:1050–1058

    Article  CAS  PubMed  Google Scholar 

  22. Mayor S, Rao M (2004) Rafts: scale-dependent, active lipid organization at the cell surface. Traffic 5:231–240

    Article  CAS  PubMed  Google Scholar 

  23. van Zanten TS, Cambi A, Koopman M et al (2009) Hotspots of GPI-anchored proteins and integrin nanoclusters function as nucleation sites for cell adhesion. Proc Natl Acad Sci U S A 106:18557–18562

    Article  PubMed Central  PubMed  Google Scholar 

  24. Sengupta P, Jovanovic-Talisman T, Skoko D et al (2011) Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis. Nat Methods 8:969–975

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  25. Goswami D, Gowrishankar K, Bilgrami S et al (2008) Nanoclusters of GPI-anchored proteins are formed by cortical actin-driven activity. Cell 135:1085–1097

    Article  CAS  PubMed  Google Scholar 

  26. Gowrishankar K, Ghosh S, Saha S et al (2012) Active remodeling of cortical actin regulates spatiotemporal organization of cell surface molecules. Cell 149:1353–1367

    Article  CAS  PubMed  Google Scholar 

  27. Altman D, Goswami D, Hasson T et al (2007) Precise positioning of myosin VI on endocytic vesicles in vivo. PLoS Biol 5:e210

    Article  PubMed Central  PubMed  Google Scholar 

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Acknowledgments

This work was supported by grants from HFSP(RGP0027/2012) and J.C. Bose Fellowship(Department of Science and Technology, India) to SM. We acknowledge support from the Wellcome Trust, the Nanoscience Mission (Department of Science and Technology, India) for the imaging stations built in the laboratory and the Central Imaging and Flow Facility (NCBS) in NCBS. S.S. would like to acknowledge fellowship support from the NCBS-TIFR Graduate programme.

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Correspondence to Satyajit Mayor .

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Saha, S., Raghupathy, R., Mayor, S. (2015). Homo-FRET Imaging Highlights the Nanoscale Organization of Cell Surface Molecules. In: Verveer, P. (eds) Advanced Fluorescence Microscopy. Methods in Molecular Biology, vol 1251. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-2080-8_9

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  • DOI: https://doi.org/10.1007/978-1-4939-2080-8_9

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-2079-2

  • Online ISBN: 978-1-4939-2080-8

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