Table 6.

Assembly metrics of Yella dog genome through the scaffolding process, with related dog genome assembly metrics for comparison.

DescriptionTotal contigsLargest contigTotal length (Gb)GC contentN50 (Mb)L50N per 100 KbBUSCO scores
CompleteFragmented
CF, GCF_000002285.382123,773,6082.32841.06%47.71942995.20%2.50%
GS, GCA_008641245.140126,700,0742.36741.21%64.51423693.70%3.40%
CFGS, RaGOO of CF onto GS40123,868,2422.32841.06%64.21443092.90%3.80%
JHMI 10X pseudohap10,39196,528,9032.41741.25%39.2221,90192.70%4.40%
v0.01,60120,780,2282.29941.11%5.513000.20%1.10%
v0.11,60021,039,2112.32640.98%5.6130032.00%21.80%
v0.21,60021,018,8192.32441.17%5.6130094.80%2.70%
v0.3a1,41221,088,4182.39441.30%5.413427095.20%2.60%
v0.3b1,41321,084,3882.39441.30%5.413427095.20%2.50%
v0.440131,668,4732.43541.30%64.9141,97292.40%4.20%
v1.0a40138,659,5422.39441.30%64.31427695.00%2.50%
v1.0b40138,666,7862.49341.30%64.31427695.10%2.30%
  • The (a) and (b) suffixes represent the different haplotype genomes. BUSCO scores calculated using v3 with the mammalia_odb9 dataset (missing % equals 100 − [Complete + Fragmented]).