Table 2.

Correlations of transcriptomics to in situ properties of the genes where both measurements are available.

In situ
CorrelationHZ
scRNASeqσ20.50.18
CV−0.690.26
0−0.640.29
Hb0.72−0.3
  • σ2, variance of a gene across cells; CV, coefficient of variation; 0, number of cells with zero expression; Hb, entropy of binarized expression; H, entropy; Z, join count test statistic.