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Evolution

  • Incipient sympatric speciation in wild barley caused by geological-edaphic divergence
    Open Access
    Incipient sympatric speciation in wild barley caused by geological-edaphic divergence

    Kexin Li, Xifeng Ren, Xiaoying Song, Xiujuan Li, Yu Zhou, Eli Harlev, Dongfa Sun, Eviatar Nevo

    Kexin Li ... Eviatar Nevo

    Published 20 October 2020

    Sympatric speciation is still contentious but here based on genome-wide analysis; we show incipient sympatric speciation of an emerging new wild barley species from Hordeum spontaneum, the progenitor of all cultivated barleys at “Evolution Plateau” (EP), Upper Galilee, Israel.

  • An evolutionary approach to systematic discovery of novel deubiquitinases, applied to <em>Legionella</em>
    Open Access
    An evolutionary approach to systematic discovery of novel deubiquitinases, applied to Legionella

    Thomas Hermanns, Ilka Woiwode, Ricardo FM Guerreiro, Robert Vogt, Michael Lammers, Kay Hofmann

    Thomas Hermanns ... Kay Hofmann

    Published 27 July 2020

    The analysis of the relationships between different deubiquitinase classes leads to the definition of an aromatic “gatekeeper” motif that distinguishes DUBs from other cysteine proteases and helps to predict new bacterial DUBs.

  • Bat IFITM3 restriction depends on S-palmitoylation and a polymorphic site within the CD225 domain
    Open Access
    Bat IFITM3 restriction depends on S-palmitoylation and a polymorphic site within the CD225 domain

    Camilla TO Benfield, Farrell MacKenzie, Markus Ritzefeld, Michela Mazzon, Stuart Weston, Edward W Tate, Boon Han Teo, Sarah E Smith, Paul Kellam, Edward C Holmes, Mark Marsh

    Camilla TO Benfield ... Mark Marsh

    Published 11 December 2019

    Comparative analysis reveals adaptive evolution of bat IFITMs and a naturally polymorphic site within the conserved CD225 domain that affects S-palmitoylation and antiviral function of bat IFITM3.

  • Endogenous RNAi pathway evolutionarily shapes the destiny of the antisense lncRNAs transcriptome
    Open Access
    Endogenous RNAi pathway evolutionarily shapes the destiny of the antisense lncRNAs transcriptome

    Ugo Szachnowski, Sara Andus, Dominika Foretek, Antonin Morillon, Maxime Wery

    Ugo Szachnowski ... Maxime Wery

    Published 28 August 2019

    A genome-wide comparative analysis of “cryptic” aslncRNAs decay in RNAi-capable and RNAi-deficient budding yeasts suggests an evolutionary contribution of RNAi in shaping the aslncRNAs transcriptome.

  • The impact of poly-A microsatellite heterologies in meiotic recombination
    Open Access
    The impact of poly-A microsatellite heterologies in meiotic recombination

    Angelika Heissl, Andrea J Betancourt, Philipp Hermann, Gundula Povysil, Barbara Arbeithuber, Andreas Futschik, Thomas Ebner, Irene Tiemann-Boege

    Angelika Heissl ... Irene Tiemann-Boege

    Published 25 April 2019

    Meiosis strongly influences the transmission and evolution of heterozygous poly-A repeats as measured experimentally in a large collection of single recombination products in a human hotspot.

  • Worldwide genetic variation of the IGHV and TRBV immune receptor gene families in humans
    Open Access
    Worldwide genetic variation of the IGHV and TRBV immune receptor gene families in humans

    Shishi Luo, Jane A Yu, Heng Li, Yun S Song

    Shishi Luo ... Yun S Song

    Published 26 February 2019

    This article presents a comprehensive study of the IGHV and TRBV gene families in a globally diverse sample of humans and shows that the two gene families exhibit starkly different patterns of variation.

  • Evolution of gene expression levels in the male reproductive organs of <em>Anopheles</em> mosquitoes
    Open Access
    Evolution of gene expression levels in the male reproductive organs of Anopheles mosquitoes

    Abril Izquierdo, Martin Fahrenberger, Tania Persampieri, Mark Q Benedict, Tom Giles, Flaminia Catteruccia, Richard D Emes, Tania Dottorini

    Abril Izquierdo ... Tania Dottorini

    Published 2 January 2019

    Expression patterns of transcripts in reproductive tissues reveal the phylogeny of the An. gambiae complex and are indicative of molecular function, transcription regulatory networks, and protein–protein interaction networks.

  • Re-annotation of eight <em>Drosophila</em> genomes
    Open Access
    Re-annotation of eight Drosophila genomes

    Haiwang Yang, Maria Jaime, Maxi Polihronakis, Kelvin Kanegawa, Therese Markow, Kenneth Kaneshiro, Brian Oliver

    Haiwang Yang ... Brian Oliver

    Published 24 December 2018

    Using a well-annotated genome to inform the annotation of genomes in a phylogeny.

  • A carnivorous plant genetic map: pitcher/insect-capture QTL on a genetic linkage map of <em>Sarracenia</em>
    Open Access
    A carnivorous plant genetic map: pitcher/insect-capture QTL on a genetic linkage map of Sarracenia

    Russell L Malmberg, Willie L Rogers, Magdy S Alabady

    Russell L Malmberg ... Magdy S Alabady

    Published 29 November 2018

    This study presents the first genetic map for a carnivorous plant, mapping 64 QTLs in Sarracenia to provide the genetic basis for differences between the pitfall and lobster-trap insect-capture strategies.

  • Pervasive allele-specific regulation on RNA decay in hybrid mice
    Open Access
    Pervasive allele-specific regulation on RNA decay in hybrid mice

    Wei Sun, Qingsong Gao, Bernhard Schaefke, Yuhui Hu, Wei Chen

    Wei Sun ... Wei Chen

    Published 16 May 2018

    Using a F1 hybrid mouse system, this study globally investigates the effects of cis-regulatory divergence on RNA decay in mammals and reveals the evolutionary roles of RNA decay regulation.

  • Aging (11)
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  • Genetics, Gene Therapy & Genetic Disease (33)
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  • Physiology (11)
  • Plant Science (11)
  • Stem Cells (26)
  • Structural Biology (28)
  • Synthetic Biology (2)
  • Systems & Computational Biology (38)
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