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Ecology

  • Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
    Open Access
    Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae

    Richard G Dorrell, Alan Kuo, Zoltan Füssy, Elisabeth H Richardson, Asaf Salamov, Nikola Zarevski, Nastasia J Freyria, Federico M Ibarbalz, Jerry Jenkins, Juan Jose Pierella Karlusich, Andrei Stecca Steindorff, Robyn E Edgar, Lori Handley, Kathleen Lail, Anna Lipzen, Vincent Lombard, John McFarlane, Charlotte Nef, Anna MG Novák Vanclová, Yi Peng, Chris Plott, Marianne Potvin, Fabio Rocha Jimenez Vieira, Kerrie Barry, Colomban de Vargas, Bernard Henrissat, Eric Pelletier, Jeremy Schmutz, Patrick Wincker, Joel B Dacks, Chris Bowler, Igor V Grigoriev, Connie Lovejoy

    Richard G Dorrell ... Connie Lovejoy

    Published 15 December 2022

    The Arctic Ocean stands apart from other oceans. Using multiple genomes and transcriptomes from cultured and environmental sources, we found distinct genetic modifications in Arctic microalgae consistent with biogeographically constrained trait selectivity as an adaptive force in algal evolution.

  • Molecular insights into high-altitude adaption and acclimatisation of <em>Aporrectodea caliginosa</em>
    Open Access
    Molecular insights into high-altitude adaption and acclimatisation of Aporrectodea caliginosa

    Iain Perry, Szabolcs Balazs Hernadi, Luis Cunha, Stephen Short, Angela Marchbank, David J Spurgeon, Pablo Orozco-terWengel, Peter Kille

    Iain Perry ... Peter Kille

    Published 17 August 2022

    A megabase genome assembly for Aporrectodea caliginosa is presented with transcriptomic and SNP-based evidence for acclimatisation and adaption to extreme weather conditions found at high altitude.

  • CNVs with adaptive potential in <em>Rangifer tarandus</em>: genome architecture and new annotated assembly
    Open Access
    CNVs with adaptive potential in Rangifer tarandus: genome architecture and new annotated assembly

    Julien Prunier, Alexandra Carrier, Isabelle Gilbert, William Poisson, Vicky Albert, Joëlle Taillon, Vincent Bourret, Steeve D Côté, Arnaud Droit, Claude Robert

    Julien Prunier ... Claude Robert

    Published 15 December 2021

    Next-generation sequencing of three caribou ecotypes aligned to a new annotated genome assembly revealed divergent CNVs, including genes with annotations in line with adaptation.

  • OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes
    Open Access
    OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes

    João Pedro Saraiva, Alexandre Bartholomäus, René Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, Carsten Vogt, Antonis Chatzinotas, Peter Stadler, Oscar Dias, Ulisses Nunes da Rocha

    João Pedro Saraiva ... Ulisses Nunes da Rocha

    Published 27 September 2021

    OrtSuite predicts synergistic species interactions using the genomic potential of microbial communities

  • A carnivorous plant genetic map: pitcher/insect-capture QTL on a genetic linkage map of <em>Sarracenia</em>
    Open Access
    A carnivorous plant genetic map: pitcher/insect-capture QTL on a genetic linkage map of Sarracenia

    Russell L Malmberg, Willie L Rogers, Magdy S Alabady

    Russell L Malmberg ... Magdy S Alabady

    Published 29 November 2018

    This study presents the first genetic map for a carnivorous plant, mapping 64 QTLs in Sarracenia to provide the genetic basis for differences between the pitfall and lobster-trap insect-capture strategies.

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