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About the Cover

June 2025 | Volume 8, No. 6

Research Articles

  • TPX2 lactylation is required for the cell cycle regulation and hepatocellular carcinoma progression
    Open Access
    TPX2 lactylation is required for the cell cycle regulation and hepatocellular carcinoma progression

    Shengzhi Liu, Jin Cai, Xiaoyu Qian, Junjiao Zhang, Yi Zhang, Xiang Meng, Mingjie Wang, Ping Gao, Xiuying Zhong

    Shengzhi Liu ... Xiuying Zhong

    Published 19 March 2025

    This study identifies TPX2 lactylation as a critical regulator of hepatocellular carcinoma progression, linking metabolic reprogramming to cell cycle dysregulation.

  • Divergent <em>Plasmodium</em> kinases drive MTOC, kinetochore and axoneme organisation in male gametogenesis
    Open Access
    Divergent Plasmodium kinases drive MTOC, kinetochore and axoneme organisation in male gametogenesis

    Ryuji Yanase, Mohammad Zeeshan, David JP Ferguson, Robert Markus, Declan Brady, Andrew R Bottrill, Anthony A Holder, David S Guttery, Rita Tewari

    Ryuji Yanase ... Rita Tewari

    Published 24 March 2025

    This study reveals how Plasmodium kinases regulate MTOC, axoneme, and kinetochore organisation in male gametogenesis, providing key insights into potential targets for malaria transmission control.

  • Antibodies targeting ADAM17 reverse neurite outgrowth inhibition by myelin-associated inhibitors
    Open Access
    Antibodies targeting ADAM17 reverse neurite outgrowth inhibition by myelin-associated inhibitors

    Nayanendu Saha, Eric Chan, Rachelle P Mendoza, Yevgeniy Romin, Murray J Tipping, Dimitar B Nikolov

    Nayanendu Saha ... Dimitar B Nikolov

    Published 25 March 2025

    Inhibitory anti-ADAM17 monoclonal antibodies (mAbs) abrogate the cleavage of p75 in a neuroblastoma-glioma cell line.

  • Rapid ER remodeling induced by a peptide–lipid complex in dying tumor cells
    Open Access
    Rapid ER remodeling induced by a peptide–lipid complex in dying tumor cells

    Samudra Sabari, Siddharth Chinchankar, Ines Ambite, Atefeh Nazari, António Pedro NBM Carneiro, Axel Svenningsson, Catharina Svanborg, Arunima Chaudhuri

    Samudra Sabari ... Arunima Chaudhuri

    Published 25 March 2025

    Alpha1-oleate induces novel ER remodeling, causing peripheral ER loss, vesiculation, and nuclear entry, expanding the nuclear ER with its content of dying cell debris.

  • Molecular mechanism of bacteriophage contraction structure of an S-layer–penetrating bacteriophage
    Open Access
    Molecular mechanism of bacteriophage contraction structure of an S-layer–penetrating bacteriophage

    Jason S Wilson, Louis-Charles Fortier, Robert P Fagan, Per A Bullough

    Jason S Wilson ... Per A Bullough

    Published 26 March 2025

    This study describes the high-resolution cryoEM structure of a contractile bacteriophage, displaying reduced contraction and lack of enzymatic domains for penetration.

  • Rheological transition driven by matrix makes cancer spheroids resilient under confinement
    Open Access
    Rheological transition driven by matrix makes cancer spheroids resilient under confinement

    Tavishi Dutt, Jimpi Langthasa, Monica Umesh, Satyarthi Mishra, Siddharth Bothra, Kottpalli Vidhipriya, Annapurna Vadaparty, Prosenjit Sen, Ramray Bhat

    Tavishi Dutt ... Ramray Bhat

    Published 27 March 2025

    The formation of lumen and increased E-cadherin levels driven by a basement membrane–like matrix of ovarian cancer spheroids impart them with elastic mechanics and resilience under confinement flow.

  • The RBR E3 ubiquitin ligase HOIL-1 can ubiquitinate diverse non-protein substrates in vitro
    Open Access
    The RBR E3 ubiquitin ligase HOIL-1 can ubiquitinate diverse non-protein substrates in vitro

    Xiangyi S Wang, Jenny Jiou, Anthony Cerra, Simon A Cobbold, Marco Jochem, Ka Hin Toby Mak, Leo Corcilius, John Silke, Richard J Payne, Ethan D Goddard-Borger, David Komander, Bernhard C Lechtenberg

    Xiangyi S Wang ... Bernhard C Lechtenberg

    Published 1 April 2025

    The RBR E3 ligase HOIL-1 ubiquitinates Ser/Thr residues and various disaccharides in vitro and can be used to generate ubiquitinated sugars as tools to study non-proteinaceous ubiquitination.

  • The MFN2 Q367H variant reveals a novel pathomechanism connected to mtDNA-mediated inflammation
    Open Access
    The MFN2 Q367H variant reveals a novel pathomechanism connected to mtDNA-mediated inflammation

    Mashiat Zaman, Govinda Sharma, Walaa Almutawa, Tyler GB Soule, Rasha Sabouny, Matt Joel, Armaan Mohan, Cole Chute, Jeffrey T Joseph, Gerald Pfeffer, Timothy E Shutt

    Mashiat Zaman ... Timothy E Shutt

    Published 2 April 2025

    The present study describes a novel pathogenic variant in MFN2 from a patient with late-onset distal myopathy and links pathogenic perturbation of MFN2 function to mitochondrial DNA release and inflammation.

  • Plasmacytoid dendritic cell sensing of hepatitis E virus is shaped by both viral and host factors
    Open Access
    Plasmacytoid dendritic cell sensing of hepatitis E virus is shaped by both viral and host factors

    Garima Joshi, Elodie Décembre, Jacques Brocard, Claire Montpellier, Martin Ferrié, Omran Allatif, Ann-Kathrin Mehnert, Johann Pons, Delphine Galiana, Viet Loan Dao Thi, Nolwenn Jouvenet, Laurence Cocquerel, Marlène Dreux

    Garima Joshi ... Marlène Dreux

    Published 2 April 2025

    Close contacts between HEV-infected cells and plasmacytoid dendritic cells trigger interferon production in a TLR7- and ORF2-dependent manner, leading to the inhibition of viral replication.

  • Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer
    Open Access
    Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer

    Inderpreet Sur, Wenshuo Zhao, Jilin Zhang, Margareta Kling Pilström, Anna T Webb, Huaitao Cheng, Ari Ristimäki, Pekka Katajisto, Martin Enge, Helena Rannikmae, Marc de la Roche, Jussi Taipale

    Inderpreet Sur ... Jussi Taipale

    Published 3 April 2025

    A region located upstream of the MYC oncogene that carries more risk for inherited cancer than any other human genomic region is required for intestinal regeneration.

  • Adenosine-generating CD39<sup>+</sup> plasmablasts predispose to successful infliximab therapy in pediatric IBD
    Open Access
    Adenosine-generating CD39+ plasmablasts predispose to successful infliximab therapy in pediatric IBD

    Alexander Schnell, Benedikt Schwarz, Hannah Schmidt, Ida Allabauer, Wolfgang Schuh, Adrian P Regensburger, Manfred Rauh, Joachim Woelfle, André Hoerning

    Alexander Schnell ... André Hoerning

    Published 8 April 2025

    IFX responders showed increased CD39 expression on plasmablasts and higher levels of CD39/CD73 co-expression on naïve and memory B cells, along with enhanced ATP degradation and adenosine production before treatment. Response was associated with increased IL10-producing plasmablasts and α4β7hi plasmablasts.

  • DAF-18/PTEN protects LIN-35/Rb from CLP-1/CAPN-mediated cleavage to promote starvation resistance
    Open Access
    DAF-18/PTEN protects LIN-35/Rb from CLP-1/CAPN-mediated cleavage to promote starvation resistance

    Jingxian Chen, Rojin Chitrakar, L Ryan Baugh

    Jingxian Chen ... L Ryan Baugh

    Published 8 April 2025

    DAF-18/PTEN acts independently of insulin/IGF signaling to promote starvation resistance via LIN-35/Rb and the DREAM complex in C. elegans L1 arrest.

Resources

  • Cytokine storm and vascular leakage in severe dengue: insights from single-cell RNA profiling
    Open Access
    Cytokine storm and vascular leakage in severe dengue: insights from single-cell RNA profiling

    Mohamad Al Kadi, Maika Yamashita, Masayuki Shimojima, Tomoki Yoshikawa, Hideki Ebihara, Daisuke Okuzaki, Takeshi Kurosu

    Mohamad Al Kadi ... Takeshi Kurosu

    Published 24 March 2025

    Fixed single-cell RNA profiling identified IL-17A/F-producing γδ T cells, ILC3s, and Th17 cells, cooperative roles of M1- and M2-like macrophages, and dual roles of neutrophils during severe dengue.

Methods

  • A novel human organoid model system reveals requirement of TCF4 for oligodendroglial differentiation
    Open Access
    A novel human organoid model system reveals requirement of TCF4 for oligodendroglial differentiation

    Federica Furlanetto, Nicole Flegel, Marco Kremp, Chiara Spear, Franziska Fröb, Margherita Alfonsetti, Bettina Bohl, Mandy Krumbiegel, Sören Turan, Andre Reis, Dieter C Lie, Jürgen Winkler, Sven Falk, Michael Wegner, Marisa Karow

    Federica Furlanetto ... Marisa Karow

    Published 28 March 2025

    In this study, we developed a cell system to study TCF4 in human oligodendrocyte differentiation, showed that TCF4 regulates human oligodendroglial differentiation in a dose-dependent manner, and established a system to dissect TCF4 function in a human tissue–like context.

  • Efficient identification of de novo mutations in family trios: a consensus-based informatic approach
    Open Access
    Efficient identification of de novo mutations in family trios: a consensus-based informatic approach

    Mariya Shadrina, Özem Kalay, Sinem Demirkaya-Budak, Charles A LeDuc, Wendy K Chung, Deniz Turgut, Gungor Budak, Elif Arslan, Vladimir Semenyuk, Brandi Davis-Dusenbery, Christine E Seidman, H Joseph Yost, Amit Jain, Bruce D Gelb

    Mariya Shadrina ... Bruce D Gelb

    Published 28 March 2025

    Researchers developed a highly precise and accurate approach for identifying de novo genetic variants in probands from trio genome sequencing, making it suitable for automated large-scale analyses.

  • Predicting cell cycle stage from 3D single-cell nuclear-stained images
    Open Access
    Predicting cell cycle stage from 3D single-cell nuclear-stained images

    Gang Li, Eva K Nichols, Valentino E Browning, Nicolas J Longhi, Madison Sanchez-Forman, Conor K Camplisson, Brian J Beliveau, William Stafford Noble

    Gang Li ... William Stafford Noble

    Published 3 April 2025

    CellCycleNet simplifies cell cycle staging from microscopy images using only a nuclear stain (DAPI). Trained on Fucci2a reporter data, our 3D deep learning model achieves high classification accuracy (AUROC = 0.95), providing a cost-effective, intervention-free tool for cell cycle profiling.

  • Optogenetic control of pheromone gradients and mating behavior in budding yeast
    Open Access
    Optogenetic control of pheromone gradients and mating behavior in budding yeast

    Alvaro Banderas, Maud Hofmann, Céline Cordier, Matthias Le Bec, M Carolina Elizondo-Cantú, Lionel Chiron, Sylvain Pouzet, Yotam Lifschytz, Wencheng Ji, Ariel Amir, Vittore Scolari, Pascal Hersen

    Alvaro Banderas ... Pascal Hersen

    Published 11 April 2025

    The authors combined theory and experiment to develop light-induced yeast pheromone gradients that spatially control growth, mating and morphology in hydrogel-embedded cells.

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Volume 8, No. 6
June 2025
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