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Table of Contents

July 2024 | Volume 7, No. 7

Research Articles

  • Nr1h4 and Thrb ameliorate ER stress and provide protection in the MPTP mouse model of Parkinson’s
    Open Access
    Nr1h4 and Thrb ameliorate ER stress and provide protection in the MPTP mouse model of Parkinson’s

    Nancy Ahuja, Shalini Gupta, Rashmi Arora, Ella Bhagyaraj, Drishti Tiwari, Sumit Kumar, Pawan Gupta

    Nancy Ahuja ... Pawan Gupta

    Published 12 April 2024

    The study highlights the potential of GW4064 and T3 in ameliorating PD as the combination of ligands shows promising effects in reducing ER stress, maintaining mitochondrial activity, and protecting dopaminergic neurons in the MPTP mouse model of PD.

  • Frataxin deficiency shifts metabolism to promote reactive microglia via glucose catabolism
    Open Access
    Frataxin deficiency shifts metabolism to promote reactive microglia via glucose catabolism

    Francesca Sciarretta, Fabio Zaccaria, Andrea Ninni, Veronica Ceci, Riccardo Turchi, Savina Apolloni, Martina Milani, Ilaria Della Valle, Marta Tiberi, Valerio Chiurchiù, Nadia D’Ambrosi, Silvia Pedretti, Nico Mitro, Cinzia Volontè, Susanna Amadio, Katia Aquilano, Daniele Lettieri-Barbato

    Francesca Sciarretta ... Daniele Lettieri-Barbato

    Published 17 April 2024

    Frataxin depletion triggers reactive microglia with increase glucose catabolism. Butyrate treatment reinstates immunometabolic balance, potentially offering neuroprotection.

  • Autocrine VEGF drives neural stem cell proximity to the adult hippocampus vascular niche
    Open Access
    Autocrine VEGF drives neural stem cell proximity to the adult hippocampus vascular niche

    Tyler J Dause, Jiyeon K Denninger, Robert Osap, Ashley E Walters, Joshua D Rieskamp, Elizabeth D Kirby

    Tyler J Dause ... Elizabeth D Kirby

    Published 17 April 2024

    Autocrine VEGF signaling is necessary to maintain adult neural stem and progenitor cell proximity to blood vessels in the adult hippocampus and promotes their motility or adhesion.

  • lncRNA LINC00941 modulates MTA2/NuRD occupancy to suppress premature human epidermal differentiation
    Open Access
    lncRNA LINC00941 modulates MTA2/NuRD occupancy to suppress premature human epidermal differentiation

    Eva Morgenstern, Carolin Molthof, Uwe Schwartz, Johannes Graf, Astrid Bruckmann, Sonja Hombach, Markus Kretz

    Eva Morgenstern ... Markus Kretz

    Published 22 April 2024

    The long non-coding RNA LINC00941 regulates skin differentiation through recruitment of the epigenetic regulator complex NuRD.

  • Porphyrin overdrive rewires cancer cell metabolism
    Open Access
    Porphyrin overdrive rewires cancer cell metabolism

    Swamy R Adapa, Gregory A Hunter, Narmin E Amin, Christopher Marinescu, Andrew Borsky, Elizabeth M Sagatys, Said M Sebti, Gary W Reuther, Gloria C Ferreira, Rays HY Jiang

    Swamy R Adapa ... Rays HY Jiang

    Published 22 April 2024

    Cancer cells exhibit a metabolic phenotype termed “porphyrin overdrive,” characterized by dysregulated heme metabolic pathways for intermediate accumulation. This rewiring is cancer-essential and cancer-specific. Targeting this vulnerability with a “bait-and-kill” strategy shows promise in eradicating malignant cells.

  • Lineage-specific changes in mitochondrial properties during neural stem cell differentiation
    Open Access
    Lineage-specific changes in mitochondrial properties during neural stem cell differentiation

    Rita Soares, Diogo M Lourenço, Isa F Mota, Ana M Sebastião, Sara Xapelli, Vanessa A Morais

    Rita Soares ... Vanessa A Morais

    Published 25 April 2024

    During SVZ-derived NSC differentiation, Mfn1/2 levels increase, whereas DRP1 levels significantly decrease. Alterations in mitochondrial morphology and bioenergetics are lineage-specific.

  • Renal antiporter ClC-5 regulates collagen I/IV through the β-catenin pathway and lysosomal degradation
    Open Access
    Renal antiporter ClC-5 regulates collagen I/IV through the β-catenin pathway and lysosomal degradation

    Mònica Durán, Gema Ariceta, Maria E Semidey, Carla Castells-Esteve, Andrea Casal-Pardo, Baisong Lu, Anna Meseguer, Gerard Cantero-Recasens

    Mònica Durán ... Gerard Cantero-Recasens

    Published 26 April 2024

    This study describes how ClC-5, the genetic cause of a rare renal pathology, regulates collagen transcription and degradation, providing a better understanding of disease progression to renal fibrosis.

  • VDR restores the expression of PINK1 and BNIP3 in TECs of streptozotocin-induced diabetic mice
    Open Access
    VDR restores the expression of PINK1 and BNIP3 in TECs of streptozotocin-induced diabetic mice

    Cheng Yang, Bin Yi, Shikun Yang, Aimei Li, Jishi Liu, Jianwen Wang, Jun Liu, Zhi Li, Qin Liao, Wei Zhang, Hao Zhang

    Cheng Yang ... Hao Zhang

    Published 2 May 2024

    VDR protects against fibrosis and defective mitophagy in diabetic mice by regulating mitophagy-related proteins PINK1 and BNIP3.

  • Molecular mechanism for recognition of the cargo adapter Rab6<sup>GTP</sup> by the dynein adapter BicD2
    Open Access
    Molecular mechanism for recognition of the cargo adapter Rab6GTP by the dynein adapter BicD2

    Xiaoxin Zhao, Sebastian Quintremil, Estrella D Rodriguez Castro, Heying Cui, David Moraga, Tingyao Wang, Richard B Vallee, Sozanne R Solmaz

    Xiaoxin Zhao ... Sozanne R Solmaz

    Published 7 May 2024

    We present a structural model for recognition of a key modulator of protein secretion, Rab6GTP, by the dynein adapter BicD2, which provides new insights into the trafficking of secretory vesicles.

  • Trim66’s paternal deficiency causes intrauterine overgrowth
    Open Access
    Trim66’s paternal deficiency causes intrauterine overgrowth

    Monika Mielnicka, Francesco Tabaro, Rahul Sureka, Basilia Acurzio, Renata Paoletti, Ferdinando Scavizzi, Marcello Raspa, Alvaro H Crevenna, Karine Lapouge, Kim Remans, Matthieu Boulard

    Monika Mielnicka ... Matthieu Boulard

    Published 7 May 2024

    TRIM66 is a PHD-Bromo–containing protein primarily expressed in spermatids. Here, we report a paternal effect phenotype whereby homozygous Trim66-mutant males sired progeny overweight at birth.

  • The concerted action of SEPT9 and EPLIN modulates the adhesion and migration of human fibroblasts
    Open Access
    The concerted action of SEPT9 and EPLIN modulates the adhesion and migration of human fibroblasts

    Matthias Hecht, Nane Alber, Pia Marhoffer, Nils Johnsson, Thomas Gronemeyer

    Matthias Hecht ... Thomas Gronemeyer

    Published 7 May 2024

    The interaction between SEPT9 and EPLIN represents an important link between the septin and the actin cytoskeleton, influencing cell adhesion, motility, and migration.

  • GDF15 controls primary cilia morphology and function thereby affecting progenitor proliferation
    Open Access
    GDF15 controls primary cilia morphology and function thereby affecting progenitor proliferation

    Katja Baur, Şeydanur Şan, Gabriele Hölzl-Wenig, Claudia Mandl, Andrea Hellwig, Francesca Ciccolini

    Katja Baur ... Francesca Ciccolini

    Published 7 May 2024

    GDF15/GFRAL ciliary signalling affects cilia morphology, function and proliferation of progenitors contacting the lateral ventricle from late development onwards.

  • Mitochondrial translation failure represses cholesterol gene expression via Pyk2-Gsk3β-Srebp2 axis
    Open Access
    Mitochondrial translation failure represses cholesterol gene expression via Pyk2-Gsk3β-Srebp2 axis

    Takahiro Toshima, Mikako Yagi, Yura Do, Haruka Hirai, Yuya Kunisaki, Dongchon Kang, Takeshi Uchiumi

    Takahiro Toshima ... Takeshi Uchiumi

    Published 8 May 2024

    This study reveals Pyk2/Gsk3β axis activation by mitochondrial translation inhibition suppresses cholesterol gene expression via Srebp2 degradation, offering a novel approach to leukoencephalopathy.

  • The immune and microbial homeostasis determines the <em>Candida</em>–mast cells cross-talk in celiac disease
    Open Access
    The immune and microbial homeostasis determines the Candida–mast cells cross-talk in celiac disease

    Giorgia Renga, Marilena Pariano, Fiorella D’Onofrio, Giuseppe Pieraccini, Claudia Di Serio, Valeria Rachela Villella, Carlo Abbate, Matteo Puccetti, Stefano Giovagnoli, Claudia Stincardini, Marina Maria Bellet, Maurizio Ricci, Claudio Costantini, Vasileios Oikonomou, Luigina Romani

    Giorgia Renga ... Luigina Romani

    Published 8 May 2024

    This study shows that the restoration of immune and microbial homeostasis promotes a beneficial Candida albicans–MC cross-talk attenuating the intestinal pathology in celiac disease.

  • <em>Brd4::Nutm1</em> fusion gene initiates NUT carcinoma in vivo
    Open Access
    Brd4::Nutm1 fusion gene initiates NUT carcinoma in vivo

    Dejin Zheng, Ahmed A Elnegiry, Chenxiang Luo, Mohammed Amine Bendahou, Liangqi Xie, Diana Bell, Yoko Takahashi, Ehab Hanna, George I Mias, Mayra F Tsoi, Bin Gu

    Dejin Zheng ... Bin Gu

    Published 9 May 2024

    This study developed the first GEMM for NUT carcinoma to syntenically recapitulate the t(15;19) chromosome translocation in humans, serving as a critical preclinical model for the disease.

  • Human T-cell activation with <em>Toxoplasma gondii</em> antigens loaded in maltodextrin nanoparticles
    Open Access
    Human T-cell activation with Toxoplasma gondii antigens loaded in maltodextrin nanoparticles

    Laura García-López, Alejandro Zamora-Vélez, Mónica Vargas-Montes, Juan Camilo Sanchez-Arcila, François Fasquelle, Didier Betbeder, Jorge Enrique Gómez-Marín

    Laura García-López ... Jorge Enrique Gómez-Marín

    Published 9 May 2024

    In this study, we investigated the human immune profile of T-cell subsets activated by a novel maltodextrin nanoparticle conjugated to Toxoplasma gondii antigen.

  • Timing of TORC1 inhibition dictates Pol III involvement in <em>Caenorhabditis elegans</em> longevity
    Open Access
    Timing of TORC1 inhibition dictates Pol III involvement in Caenorhabditis elegans longevity

    Yasir Malik, Isabel Goncalves Silva, Rene Rivera Diazgranados, Colin Selman, Nazif Alic, Jennifer MA Tullet

    Yasir Malik ... Jennifer MA Tullet

    Published 13 May 2024

    Inhibiting RNA Polymerase III engages TOR signalling to control development and improves C. elegans late-life health and longevity.

  • Inflammatory risk contributes to post-COVID endothelial dysfunction through anti-ACKR1 autoantibody
    Open Access
    Inflammatory risk contributes to post-COVID endothelial dysfunction through anti-ACKR1 autoantibody

    Ee-Soo Lee, Nhi Nguyen, Barnaby E Young, Hannah Wee, Vanessa Wazny, Khang Leng Lee, Kai Yi Tay, Liuh Ling Goh, Florence WJ Chioh, Michelle CY Law, I. Russel Lee, Lay Teng Ang, Kyle M Loh, Mark Y Chan, Bingwen E Fan, Rinkoo Dalan, David C Lye, Laurent Renia, Christine Cheung

    Ee-Soo Lee ... Christine Cheung

    Published 13 May 2024

    We study the prevalence and impact of autoantibodies on vascular dysfunction in healthy COVID-19 survivors, revealing elevated anti-ACKR1 autoantibodies associating with systemic cytokines and endothelial dysfunction. Plasma IgG enhances cellular cytotoxicity, suggesting therapeutic avenues to mitigate vascular autoantibody reactivity post-infection.

  • Modulating mycobacterial envelope integrity for antibiotic synergy with benzothiazoles
    Open Access
    Modulating mycobacterial envelope integrity for antibiotic synergy with benzothiazoles

    Eva Habjan, Alexander Lepioshkin, Vicky Charitou, Anna Egorova, Elena Kazakova, Vien QT Ho, Wilbert Bitter, Vadim Makarov, Alexander Speer

    Eva Habjan ... Alexander Speer

    Published 14 May 2024

    This study explores benzothiazoles targeting a novel mycobacterial vulnerability, resulting in increased mycobacterial cell envelope permeability and enhanced antibiotic activity.

  • Ribosome rescue factor PELOTA modulates translation start site choice for C/EBPα protein isoforms
    Open Access
    Ribosome rescue factor PELOTA modulates translation start site choice for C/EBPα protein isoforms

    Samantha G Fernandez, Lucas Ferguson, Nicholas T Ingolia

    Samantha G Fernandez ... Nicholas T Ingolia

    Published 21 May 2024

    Alternative translation initiation on a single mRNA can generate distinct protein isoforms. This work finds that the ribosome rescue factor, PELOTA, influences start site choice on the developmental transcription factor, C/EBPα.

  • Dual neutrophil subsets exacerbate or suppress inflammation in tuberculosis via IL-1β or PD-L1
    Open Access
    Dual neutrophil subsets exacerbate or suppress inflammation in tuberculosis via IL-1β or PD-L1

    Emilie Doz-Deblauwe, Badreddine Bounab, Florence Carreras, Julia S Fahel, Sergio C Oliveira, Mohamed Lamkanfi, Yves Le Vern, Pierre Germon, Julien Pichon, Florent Kempf, Christophe Paget, Aude Remot, Nathalie Winter

    Emilie Doz-Deblauwe ... Nathalie Winter

    Published 21 May 2024

    Neutrophils, key cells in tuberculosis, reach the lungs as two distinct subsets playing opposite roles in inflammation: either exacerbating via IL-1b or dampening via PD-L1.

Methods

  • Combining sophisticated fast FLIM, confocal microscopy, and STED nanoscopy for live-cell imaging of tunneling nanotubes
    Open Access
    Combining sophisticated fast FLIM, confocal microscopy, and STED nanoscopy for live-cell imaging of tunneling nanotubes

    Magalie Bénard, Christophe Chamot, Damien Schapman, Aurélien Debonne, Alexis Lebon, Fatéméh Dubois, Guénaëlle Levallet, Hitoshi Komuro, Ludovic Galas

    Magalie Bénard ... Ludovic Galas

    Published 22 April 2024

    Here, we proposed an innovative advanced light imaging to reveal the dynamics of tunneling nanotubes (TNTs) that are now considered as a long- and short-distance route for cell-to-cell communication.

Resources

  • iMPAQT reveals that adequate mitohormesis from TFAM overexpression leads to life extension in mice
    Open Access
    iMPAQT reveals that adequate mitohormesis from TFAM overexpression leads to life extension in mice

    Ko Igami, Hiroki Kittaka, Mikako Yagi, Kazuhito Gotoh, Yuichi Matsushima, Tomomi Ide, Masataka Ikeda, Saori Ueda, Shin-Ichiro Nitta, Manami Hayakawa, Keiichi I. Nakayama, Masaki Matsumoto, Dongchon Kang, Takeshi Uchiumi

    Ko Igami ... Takeshi Uchiumi

    Published 25 April 2024

    Overexpressing TFAM leads to smaller, leaner mice with extended lifespans. The iMPAQT analysis revealed changes in mitochondrial protein expression and characteristic metabolic shifts indicative of mitohormesis as an adaptive strategy in skeletal muscle.

  • Systems genetics analysis of human body fat distribution genes identifies adipocyte processes
    Open Access
    Systems genetics analysis of human body fat distribution genes identifies adipocyte processes

    Jordan N Reed, Jiansheng Huang, Yong Li, Lijiang Ma, Dhanush Banka, Martin Wabitsch, Tianfang Wang, Wen Ding, Johan LM Björkegren, Mete Civelek

    Jordan N Reed ... Mete Civelek

    Published 3 May 2024

    Using Bayesian network analysis, we modeled gene-gene interactions and predicted novel regulators of adipose tissue fat storage. We show that five novel genes affect adipogenesis or mitochondrial function in human fat cells.

  • REMEMProt: a resource of membrane-enriched proteome profiles, their disease associations, and biomarker status
    Open Access
    REMEMProt: a resource of membrane-enriched proteome profiles, their disease associations, and biomarker status

    Anjana Aravind, Revathy Nandakumar, Mukhtar Ahmed, Mahammad Nisar, Akhina Palollathil, Anagha Kanichery, Sourav Sreelan, KP Munavvar Sinan, Rex Devasahayam Arokia Balaya, Manavalan Vijayakumar, Thottethodi Subrahmanya Keshava Prasad, Rajesh Raju

    Anjana Aravind ... Rajesh Raju

    Published 7 May 2024

    A resource of experimental specific membrane-enriched mass spectrometry–derived proteome.

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Volume 7, No. 7
July 2024
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