Transcriptome-wide RNA binding analysis of C9orf72 poly(PR) dipeptides

Rubika Balendra; Igor Ruiz de los Mozos; Hana M Odeh; Idoia Glaria; Carmelo Milioto; Katherine M Wilson; Agnieszka M Ule; Martina Hallegger; Laura Masino; Stephen Martin; Rickie Patani; James Shorter; Jernej Ule; Adrian M Isaacs

doi:10.26508/lsa.202201824

Research Article

Open Access

Transcriptome-wide RNA binding analysis of C9orf72 poly(PR) dipeptides

View ORCID ProfileRubika Balendra, View ORCID ProfileIgor Ruiz de los Mozos, Hana M Odeh, View ORCID ProfileIdoia Glaria, View ORCID ProfileCarmelo Milioto, Katherine M Wilson, Agnieszka M Ule, Martina Hallegger, Laura Masino, Stephen Martin, Rickie Patani, View ORCID ProfileJames Shorter, View ORCID ProfileJernej Ule Correspondence email, View ORCID ProfileAdrian M Isaacs Correspondence email

Rubika Balendra

1UK Dementia Research Institute at UCL, London, UK

2Department of Neurodegenerative Disease, UCL Queen Square Institute of Neurology, London, UK

Roles: Conceptualization, Resources, Data curation, Software, Formal analysis, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing—original draft, Project administration, Writing—review and editing

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ORCID record for Rubika Balendra

Igor Ruiz de los Mozos

3The Francis Crick Institute, London, UK

4Department of Personalized Medicine, NASERTIC, Government of Navarra, Pamplona, Spain

5Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK

Roles: Resources, Data curation, Software, Formal analysis, Validation, Investigation, Visualization, Methodology, Writing—original draft, Project administration, Writing—review and editing

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ORCID record for Igor Ruiz de los Mozos

Hana M Odeh

6Department of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA

Roles: Data curation, Formal analysis, Validation, Investigation, Visualization, Methodology, Writing—original draft, Project administration, Writing—review and editing

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Idoia Glaria

1UK Dementia Research Institute at UCL, London, UK

2Department of Neurodegenerative Disease, UCL Queen Square Institute of Neurology, London, UK

7Research Support Service, Institute of Agrobiotechnology, CSIC-Government of Navarra, Mutilva, Spain

Roles: Investigation, Writing—review and editing

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ORCID record for Idoia Glaria

Carmelo Milioto

1UK Dementia Research Institute at UCL, London, UK

2Department of Neurodegenerative Disease, UCL Queen Square Institute of Neurology, London, UK

Roles: Investigation, Writing—review and editing

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ORCID record for Carmelo Milioto

Katherine M Wilson

1UK Dementia Research Institute at UCL, London, UK

2Department of Neurodegenerative Disease, UCL Queen Square Institute of Neurology, London, UK

Roles: Investigation, Writing—review and editing

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Agnieszka M Ule

5Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK

Roles: Investigation, Methodology, Writing—review and editing

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Martina Hallegger

3The Francis Crick Institute, London, UK

Roles: Investigation, Methodology, Writing—review and editing

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Laura Masino

8Structural Biology Science Technology Platform, The Francis Crick Institute, London, UK

Roles: Data curation, Software, Formal analysis, Validation, Investigation, Visualization, Methodology, Writing—original draft, Writing—review and editing

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Stephen Martin

8Structural Biology Science Technology Platform, The Francis Crick Institute, London, UK

Roles: Supervision, Writing—review and editing

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Rickie Patani

3The Francis Crick Institute, London, UK

5Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK

Roles: Supervision, Writing—review and editing

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James Shorter

6Department of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA

Roles: Resources, Data curation, Formal analysis, Supervision, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing—original draft, Writing—review and editing

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ORCID record for James Shorter

Jernej Ule

3The Francis Crick Institute, London, UK

5Department of Neuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK

9UK Dementia Research Institute at King’s College London, Maurice Wohl Clinical Neuroscience Institute, London, UK

Roles: Conceptualization, Resources, Data curation, Software, Formal analysis, Supervision, Validation, Investigation, Visualization, Methodology, Writing—original draft, Project administration, Writing—review and editing

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ORCID record for Jernej Ule
For correspondence: jernej.ule@kcl.ac.uk

Adrian M Isaacs

1UK Dementia Research Institute at UCL, London, UK

2Department of Neurodegenerative Disease, UCL Queen Square Institute of Neurology, London, UK

Roles: Conceptualization, Resources, Data curation, Formal analysis, Supervision, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing—original draft, Project administration, Writing—review and editing

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ORCID record for Adrian M Isaacs
For correspondence: a.isaacs@ucl.ac.uk

Published 12 July 2023. DOI: 10.26508/lsa.202201824

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Transcriptome-wide poly(PR)-RNA binding

Rubika Balendra, Igor Ruiz de los Mozos, Hana M Odeh, Idoia Glaria, Carmelo Milioto, Katherine M Wilson, Agnieszka M Ule, Martina Hallegger, Laura Masino, Stephen Martin, Rickie Patani, James Shorter, Jernej Ule, Adrian M Isaacs

Life Science Alliance Jul 2023, 6 (9) e202201824; DOI: 10.26508/lsa.202201824

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Transcriptome-wide poly(PR)-RNA binding

Life Science Alliance Jul 2023, 6 (9) e202201824; DOI: 10.26508/lsa.202201824

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September 2023

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