New algorithms for accurate and efficient de novo genome assembly from long DNA sequencing reads

Laura Gonzalez-Garcia; David Guevara-Barrientos; Daniela Lozano-Arce; Juanita Gil; Jorge Díaz-Riaño; Erick Duarte; Germán Andrade; Juan Camilo Bojacá; Maria Camila Hoyos-Sanchez; Christian Chavarro; Natalia Guayazan; Luis Alberto Chica; Maria Camila Buitrago Acosta; Edwin Bautista; Miller Trujillo; Jorge Duitama

doi:10.26508/lsa.202201719

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New algorithms for accurate and efficient de novo genome assembly from long DNA sequencing reads

Laura Gonzalez-Garcia, David Guevara-Barrientos, Daniela Lozano-Arce, Juanita Gil, Jorge Díaz-Riaño, Erick Duarte, Germán Andrade, Juan Camilo Bojacá, Maria Camila Hoyos-Sanchez, Christian Chavarro, Natalia Guayazan, Luis Alberto Chica, Maria Camila Buitrago Acosta, Edwin Bautista, Miller Trujillo, View ORCID ProfileJorge Duitama Correspondence email

Laura Gonzalez-Garcia

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Formal analysis, Validation, Investigation, Visualization, Methodology, Writing—original draft, Writing—review and editing

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David Guevara-Barrientos

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Formal analysis, Validation, Investigation, Writing—review and editing

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Daniela Lozano-Arce

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Formal analysis, Validation, Investigation, Writing—review and editing

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Juanita Gil

2Department of Entomology and Plant Pathology, University of Arkansas, Fayetteville, AR, USA

Roles: Validation, Investigation, Visualization, Methodology, Writing—original draft, Writing—review and editing

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Jorge Díaz-Riaño

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Validation, Investigation, Visualization, Methodology, Writing—original draft, Writing—review and editing

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Erick Duarte

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Validation, Investigation, Writing—review and editing

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Germán Andrade

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Validation, Investigation, Methodology, Writing—review and editing

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Juan Camilo Bojacá

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Validation, Investigation, Methodology, Writing—review and editing

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Maria Camila Hoyos-Sanchez

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Formal analysis, Validation, Investigation, Writing—review and editing

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Christian Chavarro

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Validation, Investigation, Methodology, Writing—review and editing

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Natalia Guayazan

3Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Validation, Investigation, Methodology, Writing—review and editing

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Luis Alberto Chica

4Research Group on Computational Biology and Microbial Ecology, Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia

5Max Planck Tandem Group in Computational Biology, Universidad de los Andes, Bogotá, Colombia

Roles: Formal analysis, Validation, Investigation, Visualization, Writing—review and editing

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Maria Camila Buitrago Acosta

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Formal analysis, Validation, Investigation, Writing—review and editing

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Edwin Bautista

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Formal analysis, Validation, Investigation, Writing—review and editing

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Miller Trujillo

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Software, Formal analysis, Validation, Investigation, Methodology, Writing—review and editing

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Jorge Duitama

1Systems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia

Roles: Conceptualization, Software, Formal analysis, Supervision, Funding acquisition, Validation, Investigation, Visualization, Methodology, Writing—original draft, Project administration, Writing—review and editing

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ORCID record for Jorge Duitama
For correspondence: ja.duitama@uniandes.edu.co

Published 22 February 2023. DOI: 10.26508/lsa.202201719

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New algorithms for long-read de novo assembly

Life Science Alliance Feb 2023, 6 (5) e202201719; DOI: 10.26508/lsa.202201719

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New algorithms for long-read de novo assembly

Life Science Alliance Feb 2023, 6 (5) e202201719; DOI: 10.26508/lsa.202201719

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