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Human adenylyl cyclase 9 is auto-stimulated by its isoform-specific C-terminal domain

View ORCID ProfileZhihao Chen, View ORCID ProfileFerenc A Antoni  Correspondence email
Zhihao Chen
Centre for Discovery Brain Sciences, Deanery of Biomedical Sciences, University of Edinburgh, Edinburgh, UK
Roles: Data curation, Formal analysis, Investigation
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  • ORCID record for Zhihao Chen
Ferenc A Antoni
Centre for Discovery Brain Sciences, Deanery of Biomedical Sciences, University of Edinburgh, Edinburgh, UK
Roles: Conceptualization, Data curation, Formal analysis, Supervision, Investigation, Methodology, Writing—original draft, Writing—review and editing
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  • For correspondence: ferenc.antoni@ed.ac.uk
Published 19 January 2023. DOI: 10.26508/lsa.202201791
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  • Figure 1.
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    Figure 1. Considerations of protein structure guiding this study.

    (A) Tripartite structure of AC9 derived from cryo-EM studies by Qi and co-workers (Qi et al, 2019, 2022). Note that the enzyme consists of a 1,353-residue single polypeptide and that some parts of the protein (shown by a dashed red line) have not been resolved in the cryo-EM studies (Antoni, 2020). Transmembrane helices 6 and 12 are interfaced in the lipid bilayer and continue into the cytoplasm as the signalling helices that form a short, parallel coiled-coil just above the catalytic domain. (B) Alignment of the hd1.1 (Qi et al, 2019, 2022) segment of human adenylyl cyclase paralogues. The small lettering in the top row indicates the positions in the coiled–coiled heptad of bovine AC9. (C, D) E326 is at the interface of the coiled-coil, at position d of the heptad repeat as schematically shown in (D).

  • Figure 2.
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    Figure 2. Levels of cAMP in HEK293FT cells expressing adenylyl cyclase 9 variants.

    (A) Mutation E326D markedly enhances cellular levels of cAMP. Intracellular levels of cAMP reported by GloSensor22F firefly luciferase bioluminescence in HEK293FT cells transiently transfected with AC9 (triangles, ▲), E326D_AC9 (circles, ●), or the skeleton vector pcDNA3 (diamonds, ◆). Isoproterenol (10 nM) was applied as indicated by the arrow. Data are the mean ± S.D. n = 4/group, representative of three independent experiments. (A, B) Effects of removing the isoform-specific C2b domain on intracellular levels of cAMP reported by GloSensor22F firefly luciferase bioluminescence from (A) HEK293FT cells transiently transfected with AC9 (triangles, ▲), AC9C2a (wedges, ▼), or pcDNA3 (diamonds, ◆). The insert shows the basal cAMP levels from the same wells. (A) Traces of AC9 and pcDNA3 are the ones already shown in (A). (C) HEK293FT cells transiently transfected with E326D_AC9 (squares, ■) or E326D_AC9C2a (circles, ●). (A) Traces of E326D_AC9 are the ones already shown in (A). Isoproterenol (10 nM) was applied as indicated by the arrow. Data are the mean ± S.D., n = 4/group, representative of three independent experiments.

    Source data are available for this figure.

    Source Data for Figure 2[LSA-2022-01791_SdataF2_F3.xlsx]

  • Figure 3.
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    Figure 3. Auto-stimulation of basal and auto-inhibition of isoproterenol-evoked cAMP production by the C2b domain of AC9.

    Statistical analyses of the data are presented in Fig 2. (A) Basal intracellular cAMP levels reported by GloSensor22F bioluminescence in HEK293FT cells transiently expressing pcDNA3, AC9, AC9C2a, E326D_AC9, or E326D_AC9C2a. Data are the average of the apparent plateau reached at 25–30 min of incubation (see Fig 2 for time courses) standardized in each well by the peak of the response elicited by 5 μM forskolin and 100 μM rolipram administered at the end of the experiment. Data are means ± S.D. n = 14/group. As the variances of the five groups were statistically different, the data analysis was carried out after log transformation of the data. One-way ANOVA, F(4,65) = 1,464, P < 0.0001; Tukey’s post hoc multiple comparison test: ***P < 0.001 versus respective variant lacking the C2b domain, and +++P < 0.0001 versus the pcDNA3 group. (A, B) Concentration–response to isoproterenol from the cells described in (A). All measurements of the standardized peak responses are shown. Curves were fitted by non-linear four-parameter regression with a variable slope in GraphPad Prism v.6. The bottom of the curve was set as the respective basal values. There was no difference between the EC50 values at α = 0.05; the range was 37–63 nM. The maximal responses were E326D_AC9C2a = E326D_AC9 = AC9C2a > AC9 = pcDNA3, where > denotes statistical significance at P < 0.05, as indicated by the 95% confidence intervals calculated by the non-linear regression algorithm. (C) Increment over the respective basal levels induced by 100 nM isoproterenol calculated by averaging three consecutive time-points once the peak level of bioluminescence was reached (see Fig 2 for time courses). The relative light units were standardized in each well by the peak of the response elicited by 5 μM forskolin and 100 μM rolipram administered at the end of the experiment. Means ± S.D. n = 4/group. One-way ANOVA, F(4,15) = 169.9, P < 0.0001; Tukey’s post hoc multiple comparison test: ***P < 0.0001 versus respective full-length variant, and +++P < 0.0001 versus the pcDNA3 group. The results for 10 nM isoproterenol were closely similar.

    Source data are available for this figure.

    Source Data for Figure 3[LSA-2022-01791_SdataF2_F3.xlsx]

  • Figure S1.
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    Figure S1. Mutation E326D of the coiled-coil markedly increases basal and agonist-induced cAMP levels.

    The increase of basal levels is dependent on the presence of the C2b domain. (A) Basal intracellular levels of cAMP reported by GloSensor22F bioluminescence in HEK293FT cells transiently transfected with 2 μg GloSensor22F plasmid and 1 (1:2) or 2 (2:2) μg of the plasmids of interest that encoded pcDNA3, E326D_AC9, or E326D_AC9C2a, respectively. Data are the average of the apparent plateau reached at 25–30 min of incubation (see Fig 3 of the main text) standardized in each well by the peak of the response elicited by 5 μM forskolin and 100 μM rolipram administered at the end of the experiment. Data are means ± S.D. n = 14/group. As the variances of the six groups were significantly different, the statistical analysis was carried out after log transformation of the data. One-way ANOVA, F(5,78) = 1,554, P < 0.0001, followed by Tukey’s post hoc multiple comparison test: +++P < 0.0001 significantly different from the respective pcDNA3 group, and ***P < 0.0001 when compared to the respective E326D_AC9C2A group. (B) Increment over the respective basal levels induced by 100 nM isoproterenol calculated by averaging three consecutive time-points once the peak level of bioluminescence was reached (see Fig 3 of the main text). The relative light units were standardized in each well by the peak of the response elicited by 5 μM forskolin and 100 μM rolipram administered at the end of the experiment. All points are shown, and the lines represent the means. (C) Increment over the respective basal levels induced by 1,000 nM prostaglandin E1. Other details as in (B). (D) Concentration–response to isoproterenol. All measured points are shown. Non-linear four-parameter regression was used to fit the curves in GraphPad Prism v.6; the respective basal values were set as the bottom of the curves. The calculated EC50s (range 28–55 nM) and the maximal responses were not different at α = 0.05. (E) Concentration–response to prostaglandin E1. All measured points are shown. As the maximum of the curve could not be estimated, EC50 values were not calculated.

  • Figure S2.
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    Figure S2. Auto-stimulation of basal and auto-inhibition of isoproterenol-evoked cAMP production by the C2b domain of AC9.

    (A) Basal intracellular cAMP levels reported by GloSensorF22 bioluminescence in HEK293FT cells transiently expressing pcDNA3, AC9, AC9C2a, E326D_AC9, or E326D_AC9C2a. Data are the average of the apparent plateau reached at 25–30 min of incubation (see Fig 3 of the main text) standardized in each well by the peak of the response elicited by 5 μM forskolin and 100 μM rolipram administered at the end of the experiment. Data are means ± S.D. n = 6/group. As the variances of the five groups were significantly different, statistical analysis was carried out after log transformation of the data. One-way ANOVA, F(4,25) = 320, P < 0.0001; Tukey’s post hoc multiple comparison test: ***P < 0.001 versus respective variant lacking the C2b domain, and +++P < 0.0001 versus the pcDNA3 group. (A, B) Concentration–response to isoproterenol from the cells described in (A). All measurements of the standardized peak responses are shown. Curves were fitted by non-linear four-parameter regression with a variable slope in GraphPad Prism v.6; the respective basal values were set as the bottom of the curves. As the maximum of the curves could not be estimated reliably, no EC50 values are reported. (C) Increment over the respective basal levels induced by 100 nM isoproterenol calculated by averaging three consecutive time-points once the peak level of bioluminescence was reached (see Fig 3 of the main text). The relative light units were standardized in each well by the peak of the response elicited by 5 μM forskolin and 100 μM rolipram administered at the end of the experiment. All points are shown, and the lines represent the means.

  • Figure S3.
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    Figure S3. Auto-stimulation of basal and auto-inhibition of isoproterenol-evoked cAMP production by the C2b domain of AC9.

    (A) Basal cAMP levels, all as in Fig S2 (A) except that data are means ± S.D. n = 14/group. As the variances of the five groups were significantly different, statistical analysis was carried out after log transformation of the data. One-way ANOVA, F(4,65) = 935, P < 0.0001; Tukey’s post hoc multiple comparison test: ***P < 0.001 versus respective variant lacking the C2b domain, and +++P < 0.0001 versus the pcDNA3 group. (A, B) Concentration–response to isoproterenol from the cells described in (A). All measurements of the standardized peak responses are shown. Curves were fitted by non-linear four-parameter regression with a variable slope in GraphPad Prism v.6; the respective basal values were set as the bottom of the curves. The EC50 of the E326D_AC9C2a (21 nM) was significantly lower (95% confidence intervals) than that of the other four groups—range 35–65 nM. The maximal responses were E326D_AC9C2a > E326D_AC9 = AC9C2a > pcDNA3 > AC9, where > denotes statistical significance at P < 0.05, as indicated by the 95% confidence intervals calculated by the non-linear regression algorithm. (C) Increment of cAMP levels above the respective basal levels at 30 nM isoproterenol. Means ± S.D. n = 4/group. Data reduction protocol as described in Fig S1B. One-way ANOVA, F(4,15) = 186.1, P < 0.0001; Tukey’s post hoc multiple comparison test: ***P < 0.001 versus respective full-length variant, and +++P < 0.0001 versus the pcDNA3 group. The results for 10 nM isoproterenol were closely similar.

  • Figure 4.
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    Figure 4. Detection of the expression of adenylyl cyclase 9 variants by immunoblots.

    (A) Immunoblot of extracts of crude membranes prepared from HEK293FT cells transfected with (from left to right, two lanes each) E326D_AC9C2a, E326D_AC9, AC9C2a, AC9. Green bands show reaction with anti_HA; red bands are stained for VAMP-associated protein 33 (VAP-A). The relative intensities of the protein bands reported by Empiria software (LI-COR Biosciences) were E326D_AC9C2a 0.42, E326D_AC9 0.40, AC9C2a 1.1, and AC9 1.0; the blot is representative of three transfections. The numbers on the left indicate the migration of the molecular size markers on the gel. (B) Relative fluorescence intensities of anti-HA immunoreactive bands in three separate transfections. Mean ± S.D., n = 3/group. **P < 0.01 significantly different from unity by a one-sample t test.

  • Figure 5.
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    Figure 5. Three modes of operation of AC9 as indicated by this study and previous work.

    Mode 1: high basal activity supported by the C2b domain and quenching of activation “occluded state” in the presence of activated Gsα, as shown in the previous work. Importantly, the production of cAMP by AC9 is inhibited by intracellular free Ca2+ through calcineurin. Mode 2: conformational change at the coiled-coil (E326D mutation in this study) enhances basal activity dependent on C2b and relieves the quenching of the activation by Gsα. Thus, the enzyme may summate input to the coiled-coil and the stimulation by Gsα. Mode 3: removal of the C2b domain markedly reduces basal activity and enables stimulation by Gsα; that is, AC9 now resembles a conventional adenylyl cyclase stimulated by Gsα.

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Auto-regulation of adenylyl cyclase 9
Zhihao Chen, Ferenc A Antoni
Life Science Alliance Jan 2023, 6 (4) e202201791; DOI: 10.26508/lsa.202201791

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Auto-regulation of adenylyl cyclase 9
Zhihao Chen, Ferenc A Antoni
Life Science Alliance Jan 2023, 6 (4) e202201791; DOI: 10.26508/lsa.202201791
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