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Table of Contents

February 2023 | Volume 6, No. 2

Research Articles

  • The βI domain promotes active β1 integrin clustering into mature adhesion sites
    Open Access
    The βI domain promotes active β1 integrin clustering into mature adhesion sites

    Giulia Mana, Donatella Valdembri, Janet A Askari, Zhenhai Li, Patrick Caswell, Cheng Zhu, Martin J Humphries, Christoph Ballestrem, Guido Serini

    Giulia Mana ... Guido Serini

    Published 21 November 2022

    Mana et al show that the extracellular headpiece βI domain is involved in conformationally active β1 integrin clustering, fibrillar adhesion formation, incorporation of soluble fibronectin dimers into fibrillar polymers, and extracellular matrix–dependent endothelial cell migration.

  • Loss of circSRY reduces γH2AX level in germ cells and impairs mouse spermatogenesis
    Open Access
    Loss of circSRY reduces γH2AX level in germ cells and impairs mouse spermatogenesis

    Yanze Song, Min Chen, Yingfan Zhang, Jiayi Li, Bowen Liu, Na Li, Min Chen, Miaomiao Qiao, Nan Wang, Yuanwei Cao, Shan Lu, Jian Chen, Wen Sun, Fei Gao, Haoyi Wang

    Yanze Song ... Haoyi Wang

    Published 22 November 2022

    The study proved that the loss of Sry circular RNA in testis causes impaired spermatogenesis, and this damage may be related to the decline in the γH2AX level during the meiosis I stage.

  • Pandemic <em>Vibrio cholerae</em> acquired competitive traits from an environmental <em>Vibrio</em> species
    Open Access
    Pandemic Vibrio cholerae acquired competitive traits from an environmental Vibrio species

    Francis J Santoriello, Paul C Kirchberger, Yann Boucher, Stefan Pukatzki

    Francis J Santoriello ... Stefan Pukatzki

    Published 29 November 2022

    Pandemic-associated Vibrio cholerae interbacterial defense genes were likely acquired through competition with and subsequent gene transfer from the fish pathogen Vibrio anguillarum.

  • Loss of NDR1/2 kinases impairs endomembrane trafficking and autophagy leading to neurodegeneration
    Open Access
    Loss of NDR1/2 kinases impairs endomembrane trafficking and autophagy leading to neurodegeneration

    Flavia Roşianu, Simeon R Mihaylov, Noreen Eder, Antonie Martiniuc, Suzanne Claxton, Helen R Flynn, Shamsinar Jalal, Marie-Charlotte Domart, Lucy Collinson, Mark Skehel, Ambrosius P Snijders, Matthias Krause, Sharon A Tooze, Sila K Ultanir

    Flavia Roşianu ... Sila K Ultanir

    Published 29 November 2022

    NDR1/2 kinases are essential for efficient endocytosis and protein clearance by autophagy. Neuron-specific dual deletion of NDR1 and NDR2 causes cortical and hippocampal neurodegeneration, implicating these kinases in neuronal protein homeostasis and health.

  • Synergistic activation of RARβ and RARγ nuclear receptors restores cell specialization during stem cell differentiation by hijacking RARα-controlled programs
    Open Access
    Synergistic activation of RARβ and RARγ nuclear receptors restores cell specialization during stem cell differentiation by hijacking RARα-controlled programs

    Aysis Koshy, Elodie Mathieux, François Stüder, Aude Bramoulle, Michele Lieb, Bruno Maria Colombo, Hinrich Gronemeyer, Marco Antonio Mendoza-Parra

    Aysis Koshy ... Marco Antonio Mendoza-Parra

    Published 29 November 2022

    Synergistic activation of RARβ and RARγ nuclear receptors in mouse stem cells restores cell specialization during neuronal differentiation by hijacking RARα-controlled programs.

  • The mechanosensitive ion channel PIEZO1 promotes satellite cell function in muscle regeneration
    Open Access
    The mechanosensitive ion channel PIEZO1 promotes satellite cell function in muscle regeneration

    Kotaro Hirano, Masaki Tsuchiya, Akifumi Shiomi, Seiji Takabayashi, Miki Suzuki, Yudai Ishikawa, Yuya Kawano, Yutaka Takabayashi, Kaori Nishikawa, Kohjiro Nagao, Eiji Umemoto, Yasuo Kitajima, Yusuke Ono, Keiko Nonomura, Hirofumi Shintaku, Yasuo Mori, Masato Umeda, Yuji Hara

    Kotaro Hirano ... Yuji Hara

    Published 29 November 2022

    PIEZO1, a mechanosensitive ion channel, regulates Rho-GTPase activity and specifically accumulates at the midbody of muscle satellite cells to precisely control cell division for muscle regeneration.

  • Loss of cell–cell adhesion triggers cell migration through Rac1-dependent ROS generation
    Open Access
    Loss of cell–cell adhesion triggers cell migration through Rac1-dependent ROS generation

    Yu-Hsuan Chen, Jinn-Yuan Hsu, Ching-Tung Chu, Yao-Wen Chang, Jia-Rong Fan, Muh-Hwa Yang, Hong-Chen Chen

    Yu-Hsuan Chen ... Hong-Chen Chen

    Published 29 November 2022

    This work shows that an increase in intracellular ROS through the Rac1–NOX pathway is a general response upon loss of cell–cell adhesion, which is necessary for triggering cell migration.

  • <em>Drosophila</em> pVALIUM10 TRiP RNAi lines cause undesired silencing of Gateway-based transgenes
    Open Access
    Drosophila pVALIUM10 TRiP RNAi lines cause undesired silencing of Gateway-based transgenes

    Dimitrije Stanković, Gábor Csordás, Mirka Uhlirova

    Dimitrije Stanković ... Mirka Uhlirova

    Published 29 November 2022

    Drosophila pVALIUM10 TRiP RNAi lines cause undesirable knockdown of transgenic reporters and overexpression lines generated with the help of the Gateway cloning technology by targeting attB sites.

  • A cryo-electron microscopic approach to elucidate protein structures from human brain microsomes
    Open Access
    A cryo-electron microscopic approach to elucidate protein structures from human brain microsomes

    Marios L Tringides, Zhemin Zhang, Christopher E Morgan, Chih-Chia Su, Edward W Yu

    Marios L Tringides ... Edward W Yu

    Published 30 November 2022

    Using cryo-EM to simultaneously identify and solve structures of five enzymes from a raw human brain microsomal lysate, highlighting the potential for facilitating structural-omics at the atomic level.

  • Simultaneous solving high-resolution structures of various enzymes from human kidney microsomes
    Open Access
    Simultaneous solving high-resolution structures of various enzymes from human kidney microsomes

    Meinan Lyu, Chih-Chia Su, Masaru Miyagi, Edward W Yu

    Meinan Lyu ... Edward W Yu

    Published 30 November 2022

    Using cryo-EM to simultaneously identify and solve structures of four enzymes from a raw human kidney microsomal lysate that denote its potential in facilitating structural-omics at the atomic level.

  • Inflammasome is a central player in B cell development and homing
    Open Access
    Inflammasome is a central player in B cell development and homing

    Man Lun Hsu, Moncef Zouali

    Man Lun Hsu ... Moncef Zouali

    Published 30 November 2022

    Whereas the inflammasome is known to be a key player in innate immunity, this study shows that NLRP3 is essential for egress/mobilization of B cells from the bone marrow to secondary lymphoid organs.

  • DSCR1 deficiency ameliorates the Aβ pathology of Alzheimer’s disease by enhancing microglial activity
    Open Access
    DSCR1 deficiency ameliorates the Aβ pathology of Alzheimer’s disease by enhancing microglial activity

    Chiyeol Choi, Hyerin Kim, Jiyoung Oh, Chanho Park, Min Kim, Chu-Sook Kim, Jiyoung Park

    Chiyeol Choi ... Jiyoung Park

    Published 30 November 2022

    The authors suggested that an important role of Down syndrome critical region 1 (DSCR1) in microglial activation is to provide a potential therapeutic target for microglial Aβ clearance in Alzheimer’s disease.

  • Revisiting degron motifs in human AURKA required for its targeting by APC/C<sup>FZR1</sup>
    Open Access
    Revisiting degron motifs in human AURKA required for its targeting by APC/CFZR1

    Ahmed Abdelbaki, Camilla Ascanelli, Cynthia N Okoye, H Begum Akman, Giacomo Janson, Mingwei Min, Chiara Marcozzi, Anja Hagting, Rhys Grant, Maria De Luca, Italia Anna Asteriti, Giulia Guarguaglini, Alessandro Paiardini, Catherine Lindon

    Ahmed Abdelbaki ... Catherine Lindon

    Published 30 November 2022

    AURKA degron motifs are redefined to show that the so-called N-terminal “A-box” is in fact a D-box, and the so-called “D-box” in the C-terminus is not a degron but a motif critical for the active, degradable conformation of AURKA.

  • Disrupted in renal carcinoma 2 (DIRC2/SLC49A4) is an H<sup>+</sup>-driven lysosomal pyridoxine exporter
    Open Access
    Disrupted in renal carcinoma 2 (DIRC2/SLC49A4) is an H+-driven lysosomal pyridoxine exporter

    Shogo Akino, Tomoya Yasujima, Takahiro Yamashiro, Hiroaki Yuasa

    Shogo Akino ... Hiroaki Yuasa

    Published 1 December 2022

    DIRC2 is an H+-driven lysosomal pyridoxine exporter involved in the regulation of cellular pyridoxine storage.

  • MMS22L-TONSL functions in sister chromatid cohesion in a pathway parallel to DSCC1-RFC
    Open Access
    MMS22L-TONSL functions in sister chromatid cohesion in a pathway parallel to DSCC1-RFC

    Janne JM van Schie, Klaas de Lint, Govind M Pai, Martin A Rooimans, Rob MF Wolthuis, Job de Lange

    Janne JM van Schie ... Job de Lange

    Published 8 December 2022

    A genome-wide CRISPR screen in human DSCC1-knockout cells reveals multiple dependencies, including additive DNA replication defects resulting from POLE3-4 depletion and enhanced sister chromatid cohesion loss following depletion of MMS22L-TONSL.

  • SLAMF6 compartmentalization enhances T cell functions
    Open Access
    SLAMF6 compartmentalization enhances T cell functions

    Yevgeniya Gartshteyn, Anca D Askanase, Ruijiang Song, Shoiab Bukhari, Matthew Dragovich, Kieran Adam, Adam Mor

    Yevgeniya Gartshteyn ... Adam Mor

    Published 8 December 2022

    After stimulation, the T cell co-receptor SLAMF6 colocalizes with the TCR–CD3 complex to enhance T cell activation. Targeting SLAMF6 localization and function with bispecific antibodies is a novel mechanism with potential therapeutic translation.

  • Horizontal transfer of the <em>rfb</em> cluster in <em>Leptospira</em> is a genetic determinant of serovar identity
    Open Access
    Horizontal transfer of the rfb cluster in Leptospira is a genetic determinant of serovar identity

    Cecilia Nieves, Antony T Vincent, Leticia Zarantonelli, Mathieu Picardeau, Frédéric J Veyrier, Alejandro Buschiazzo

    Cecilia Nieves ... Alejandro Buschiazzo

    Published 9 December 2022

    Leptospira strains show very large antigenic variation (serovars). Here, the rfb gene cluster is shown to be transferred horizontally within/among Leptospira species, discriminating serovar identity.

  • Hyperactive immature state and differential CXCR2 expression of neutrophils in severe COVID-19
    Open Access
    Hyperactive immature state and differential CXCR2 expression of neutrophils in severe COVID-19

    Christopher M Rice, Philip Lewis, Fernando M Ponce-Garcia, Willem Gibbs, Sarah Groves, Drinalda Cela, Fergus Hamilton, David Arnold, Catherine Hyams, Elizabeth Oliver, Rachael Barr, Anu Goenka, Andrew Davidson, Linda Wooldridge, Adam Finn, Laura Rivino, Borko Amulic

    Christopher M Rice ... Borko Amulic

    Published 13 December 2022

    Severe COVID-19 is associated with alterations to the neutrophil compartment with circulating hyperactive immature neutrophils and a maintenance of CXCR2 expression.

  • Identifying novel regulators of placental development using time-series transcriptome data
    Open Access
    Identifying novel regulators of placental development using time-series transcriptome data

    Ha TH Vu, Haninder Kaur, Kelby R Kies, Rebekah R Starks, Geetu Tuteja

    Ha TH Vu ... Geetu Tuteja

    Published 13 December 2022

    Network analysis of RNA-seq data generated from mouse placenta at embryonic days 7.5, 8.5, and 9.5 identifies novel regulators of placental development.

  • Linking medicinal cannabis to autotaxin–lysophosphatidic acid signaling
    Open Access
    Linking medicinal cannabis to autotaxin–lysophosphatidic acid signaling

    Mathias C Eymery, Andrew A McCarthy, Jens Hausmann

    Mathias C Eymery ... Jens Hausmann

    Published 9 January 2023

    The authors show that Δ9-trans-tetrahydrocannabinol, the main psychoactive compound in medicinal cannabis, could be considered as a therapeutic agent by inhibiting autotaxin–lysophosphatidic acid production.

Resources

  • Transcriptome analyses in infertile men reveal germ cell–specific expression and splicing patterns
    Open Access
    Transcriptome analyses in infertile men reveal germ cell–specific expression and splicing patterns

    Lara M Siebert-Kuss, Henrike Krenz, Tobias Tekath, Marius Wöste, Sara Di Persio, Nicole Terwort, Margot J Wyrwoll, Jann-Frederik Cremers, Joachim Wistuba, Martin Dugas, Sabine Kliesch, Stefan Schlatt, Frank Tüttelmann, Jörg Gromoll, Nina Neuhaus, Sandra Laurentino

    Lara M Siebert-Kuss ... Sandra Laurentino

    Published 29 November 2022

    We uncover extensive germ cell type–dependent transcriptome changes in human spermatogenesis and demonstrate the potential of alternative splicing in the regulation of spermatogenesis.

Corrections

  • Open Access
    Correction: Building in vitro models of the brain to understand the role of APOE in Alzheimer’s disease

    Rebecca L Pinals, Li-Huei Tsai

    Rebecca L Pinals ... Li-Huei Tsai

    Published 1 December 2022

    Human induced pluripotent stem cell (hiPSC)–based models of the brain will be key to unraveling the role of APOE ɛ4 in the interconnected cellular changes underlying Alzheimer’s disease.

  • Open Access
    Correction: Single-cell RNA sequencing of human breast tumour-infiltrating immune cells reveals a γδ T-cell subtype associated with good clinical outcome

    Katerina Boufea, Victor Gonzalez-Huici, Marcus Lindberg, Nelly N Olova, Stefan Symeonides, Olga Oikonomidou, Nizar N Batada

    Katerina Boufea ... Nizar N Batada

    Published 13 December 2022

    Single cell sequencing of γδ-T cells from human blood and tumours revealed novel markers of subtypes with distinct effector functions and a subtype that is associated with favourable clinical outcome.

Reviewer Index

  • Open Access
    2022 Reviewer Index

    Eric Sawey

    Eric Sawey

    Published 23 January 2023

    The LSA Editors thank these scientists for sharing their time and expertise while reviewing manuscripts in 2022. We sincerely appreciate their support.

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Volume 6, No. 2
February 2023
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