Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing

Jonathan Liu; Vanessa Tran; Venkata Naga Pranathi Vemuri; Ashley Byrne; Michael Borja; Yang Joon Kim; Snigdha Agarwal; Ruofan Wang; Kyle Awayan; Abhishek Murti; Aris Taychameekiatchai; Bruce Wang; George Emanuel; Jiang He; John Haliburton; Angela Oliveira Pisco; Norma F Neff

doi:10.26508/lsa.202201701

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Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing

View ORCID ProfileJonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, View ORCID ProfileAshley Byrne, Michael Borja, View ORCID ProfileYang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, View ORCID ProfileAbhishek Murti, Aris Taychameekiatchai, View ORCID ProfileBruce Wang, George Emanuel, Jiang He, John Haliburton, View ORCID ProfileAngela Oliveira Pisco, View ORCID ProfileNorma F Neff Correspondence email

Jonathan Liu

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Resources, Data curation, Software, Formal analysis, Validation, Investigation, Visualization, Methodology, Writing—original draft, review, and editing

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ORCID record for Jonathan Liu

Vanessa Tran

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Resources, Data curation, Investigation, Visualization, Methodology, Writing—original draft

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Venkata Naga Pranathi Vemuri

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Data curation, Software, Formal analysis, Visualization, Methodology, Writing—original draft, review, and editing

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Ashley Byrne

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Resources, Data curation, Formal analysis, Investigation, Methodology, Writing—review and editing

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ORCID record for Ashley Byrne

Michael Borja

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Resources, Data curation, Validation, Investigation, Visualization, Methodology, Writing—review and editing

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Yang Joon Kim

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Data curation, Software, Methodology, Writing—review and editing

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ORCID record for Yang Joon Kim

Snigdha Agarwal

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Data curation, Software, Formal analysis, Validation, Visualization, Methodology, Writing—review and editing

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Ruofan Wang

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Resources, Investigation, Visualization, Methodology, Writing—review and editing

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Kyle Awayan

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Resources, Data curation, Software, Formal analysis, Validation, Visualization, Writing—review and editing

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Abhishek Murti

2School of Medicine, University of California, San Francisco, CA, USA

Roles: Resources, Data curation, Formal analysis, Validation, Methodology, Writing—review and editing

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ORCID record for Abhishek Murti

Aris Taychameekiatchai

2School of Medicine, University of California, San Francisco, CA, USA

Roles: Resources, Data curation, Validation, Investigation, Visualization, Methodology, Writing—review and editing

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Bruce Wang

2School of Medicine, University of California, San Francisco, CA, USA

Roles: Resources, Data curation, Validation, Investigation, Visualization, Methodology, Writing—review and editing

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ORCID record for Bruce Wang

George Emanuel

3Vizgen Inc., Cambridge, MA, USA

Roles: Conceptualization, Resources, Data curation, Software, Formal analysis, Validation, Investigation, Methodology

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Jiang He

3Vizgen Inc., Cambridge, MA, USA

Roles: Resources, Software, Formal analysis, Validation, Visualization, Methodology, Writing—review and editing

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John Haliburton

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Resources, Data curation, Software, Supervision, Investigation, Methodology, Project administration, Writing—review and editing

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Angela Oliveira Pisco

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Resources, Data curation, Software, Formal analysis, Supervision, Validation, Investigation, Visualization, Methodology, Writing—review and editing

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ORCID record for Angela Oliveira Pisco

Norma F Neff

1Chan Zuckerberg Biohub, San Francisco, CA, USA

Roles: Conceptualization, Resources, Data curation, Supervision, Investigation, Visualization, Methodology, Writing—review and editing

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ORCID record for Norma F Neff
For correspondence: norma.neff@czbiohub.org

Published 16 December 2022. DOI: 10.26508/lsa.202201701

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Concordance of MERFISH with single-cell RNA-Seq

Jonathan Liu, Vanessa Tran, Venkata Naga Pranathi Vemuri, Ashley Byrne, Michael Borja, Yang Joon Kim, Snigdha Agarwal, Ruofan Wang, Kyle Awayan, Abhishek Murti, Aris Taychameekiatchai, Bruce Wang, George Emanuel, Jiang He, John Haliburton, Angela Oliveira Pisco, Norma F Neff

Life Science Alliance Dec 2022, 6 (1) e202201701; DOI: 10.26508/lsa.202201701

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Concordance of MERFISH with single-cell RNA-Seq

Life Science Alliance Dec 2022, 6 (1) e202201701; DOI: 10.26508/lsa.202201701

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