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Research Article
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Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK–driven lymphomagenesis

Elisa Redl, Raheleh Sheibani-Tezerji, View ORCID ProfileCrhistian de Jesus Cardona, Patricia Hamminger, Gerald Timelthaler, Melanie Rosalia Hassler, Maša Zrimšek, View ORCID ProfileSabine Lagger, Thomas Dillinger, Lorena Hofbauer, View ORCID ProfileKristina Draganić, View ORCID ProfileAndreas Tiefenbacher, Michael Kothmayer, Charles H Dietz, Bernard H Ramsahoye, View ORCID ProfileLukas Kenner, Christoph Bock, Christian Seiser, Wilfried Ellmeier, Gabriele Schweikert, View ORCID ProfileGerda Egger  Correspondence email
Elisa Redl
1Department of Pathology, Medical University of Vienna, Vienna, Austria
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Raheleh Sheibani-Tezerji
2Ludwig Boltzmann Institute Applied Diagnostics (LBI AD), Vienna, Austria
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Crhistian de Jesus Cardona
3Eberhard Karls University of Tübingen, Faculty of Mathematics and Natural Sciences, Tübingen, Germany
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  • ORCID record for Crhistian de Jesus Cardona
Patricia Hamminger
4Division of Immunobiology, Institute of Immunology, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria
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Gerald Timelthaler
5Institute of Cancer Research, Medical University of Vienna, Vienna, Austria
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Melanie Rosalia Hassler
1Department of Pathology, Medical University of Vienna, Vienna, Austria
6Department of Urology, Medical University of Vienna, Vienna, Austria
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Maša Zrimšek
1Department of Pathology, Medical University of Vienna, Vienna, Austria
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Sabine Lagger
7Unit of Laboratory Animal Pathology, University of Veterinary Medicine Vienna, Vienna, Austria
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  • ORCID record for Sabine Lagger
Thomas Dillinger
1Department of Pathology, Medical University of Vienna, Vienna, Austria
2Ludwig Boltzmann Institute Applied Diagnostics (LBI AD), Vienna, Austria
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Lorena Hofbauer
1Department of Pathology, Medical University of Vienna, Vienna, Austria
8Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria
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Kristina Draganić
1Department of Pathology, Medical University of Vienna, Vienna, Austria
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Andreas Tiefenbacher
1Department of Pathology, Medical University of Vienna, Vienna, Austria
2Ludwig Boltzmann Institute Applied Diagnostics (LBI AD), Vienna, Austria
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Michael Kothmayer
9Center for Anatomy and Cell Biology, Medical University of Vienna, Vienna, Austria
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Charles H Dietz
10CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria
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Bernard H Ramsahoye
11Centre for Genetic and Experimental Medicine, Institute of Genomic and Molecular Medicine, University of Edinburgh, Edinburgh, UK
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Lukas Kenner
1Department of Pathology, Medical University of Vienna, Vienna, Austria
7Unit of Laboratory Animal Pathology, University of Veterinary Medicine Vienna, Vienna, Austria
12Christian Doppler Laboratory for Applied Metabolomics (CDL-AM), Medical University of Vienna, Vienna, Austria
13Center for Biomarker Research in Medicine (CBmed), CoreLab 2, Medical University of Vienna, Vienna, Austria
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Christoph Bock
10CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria
14Department of Laboratory Medicine, Medical University of Vienna, Vienna, Austria
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Christian Seiser
9Center for Anatomy and Cell Biology, Medical University of Vienna, Vienna, Austria
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Wilfried Ellmeier
4Division of Immunobiology, Institute of Immunology, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria
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Gabriele Schweikert
15Max Planck Institute for Intelligent Systems, Tübingen, Germany
16Division of Computational Biology, School of Life Sciences, University of Dundee, Dundee, UK
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Gerda Egger
1Department of Pathology, Medical University of Vienna, Vienna, Austria
2Ludwig Boltzmann Institute Applied Diagnostics (LBI AD), Vienna, Austria
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  • For correspondence: gerda.egger@meduniwien.ac.at
Published 11 December 2020. DOI: 10.26508/lsa.202000794
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Abstract

Malignant transformation depends on genetic and epigenetic events that result in a burst of deregulated gene expression and chromatin changes. To dissect the sequence of events in this process, we used a T-cell–specific lymphoma model based on the human oncogenic nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) translocation. We find that transformation of T cells shifts thymic cell populations to an undifferentiated immunophenotype, which occurs only after a period of latency, accompanied by induction of the MYC-NOTCH1 axis and deregulation of key epigenetic enzymes. We discover aberrant DNA methylation patterns, overlapping with regulatory regions, plus a high degree of epigenetic heterogeneity between individual tumors. In addition, ALK-positive tumors show a loss of associated methylation patterns of neighboring CpG sites. Notably, deletion of the maintenance DNA methyltransferase DNMT1 completely abrogates lymphomagenesis in this model, despite oncogenic signaling through NPM-ALK, suggesting that faithful maintenance of tumor-specific methylation through DNMT1 is essential for sustained proliferation and tumorigenesis.

  • Received May 25, 2020.
  • Revision received November 28, 2020.
  • Accepted December 1, 2020.
  • © 2020 Redl et al.
Creative Commons logoCreative Commons logohttps://creativecommons.org/licenses/by/4.0/

This article is available under a Creative Commons License (Attribution 4.0 International, as described at https://creativecommons.org/licenses/by/4.0/).

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DNMT1 function in T-cell lymphoma
Elisa Redl, Raheleh Sheibani-Tezerji, Crhistian de Jesus Cardona, Patricia Hamminger, Gerald Timelthaler, Melanie Rosalia Hassler, Maša Zrimšek, Sabine Lagger, Thomas Dillinger, Lorena Hofbauer, Kristina Draganić, Andreas Tiefenbacher, Michael Kothmayer, Charles H Dietz, Bernard H Ramsahoye, Lukas Kenner, Christoph Bock, Christian Seiser, Wilfried Ellmeier, Gabriele Schweikert, Gerda Egger
Life Science Alliance Dec 2020, 4 (2) e202000794; DOI: 10.26508/lsa.202000794

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DNMT1 function in T-cell lymphoma
Elisa Redl, Raheleh Sheibani-Tezerji, Crhistian de Jesus Cardona, Patricia Hamminger, Gerald Timelthaler, Melanie Rosalia Hassler, Maša Zrimšek, Sabine Lagger, Thomas Dillinger, Lorena Hofbauer, Kristina Draganić, Andreas Tiefenbacher, Michael Kothmayer, Charles H Dietz, Bernard H Ramsahoye, Lukas Kenner, Christoph Bock, Christian Seiser, Wilfried Ellmeier, Gabriele Schweikert, Gerda Egger
Life Science Alliance Dec 2020, 4 (2) e202000794; DOI: 10.26508/lsa.202000794
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Volume 4, No. 2
February 2021
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