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OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes

View ORCID ProfileJoão Pedro Saraiva, View ORCID ProfileAlexandre Bartholomäus, View ORCID ProfileRené Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, View ORCID ProfileCarsten Vogt, Antonis Chatzinotas, View ORCID ProfilePeter Stadler, Oscar Dias, View ORCID ProfileUlisses Nunes da Rocha  Correspondence email
João Pedro Saraiva
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
Roles: Data curation, Software, Formal analysis, Validation, Visualization, Writing—original draft, review, and editing
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  • ORCID record for João Pedro Saraiva
Alexandre Bartholomäus
2GFZ German Research Centre for Geosciences, Section Geomicrobiology, Potsdam, Germany
Roles: Data curation, Software, Validation, Visualization, Methodology, Writing—review and editing
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  • ORCID record for Alexandre Bartholomäus
René Kallies
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
Roles: Resources, Methodology, Writing—review and editing
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Marta Gomes
3Centre of Biological Engineering, University of Minho, Braga, Portugal
Roles: Formal analysis, Validation, Methodology
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Marcos Bicalho
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
Roles: Software, Validation
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Jonas Coelho Kasmanas
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
4Institute of Mathematics and Computer Sciences, University of Sao Paulo, Sao Carlos, Brazil
7Department of Computer Science, Bioinformatics Group, Interdisciplinary Center for Bioinformatics, and Competence Center for Scalable Data Services and Solutions Dresden/Leipzig, University of Leipzig, Leipzig, Germany
Roles: Software, Formal analysis, Writing—review and editing
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Carsten Vogt
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
Roles: Data curation, Writing—original draft, review, and editing
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  • ORCID record for Carsten Vogt
Antonis Chatzinotas
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
5Institute of Biology, Leipzig University, Leipzig, Germany
6German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig, Leipzig, Germany
Roles: Resources, Writing—review and editing
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Peter Stadler
7Department of Computer Science, Bioinformatics Group, Interdisciplinary Center for Bioinformatics, and Competence Center for Scalable Data Services and Solutions Dresden/Leipzig, University of Leipzig, Leipzig, Germany
8Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany
9Institute for Theoretical Chemistry, University of Vienna, Wien, Austria
10Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia
11Santa Fe Institute, Santa Fe, NM, USA
Roles: Methodology, Writing—review and editing
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Oscar Dias
3Centre of Biological Engineering, University of Minho, Braga, Portugal
Roles: Conceptualization, Writing—review and editing
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Ulisses Nunes da Rocha
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
Roles: Conceptualization, Resources, Software, Supervision, Funding acquisition, Investigation, Methodology, Project administration, Writing—original draft, review, and editing
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  • ORCID record for Ulisses Nunes da Rocha
  • For correspondence: ulisses.rocha@ufz.de
Published 27 September 2021. DOI: 10.26508/lsa.202101167
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Mining interactions with OrtSuite
João Pedro Saraiva, Alexandre Bartholomäus, René Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, Carsten Vogt, Antonis Chatzinotas, Peter Stadler, Oscar Dias, Ulisses Nunes da Rocha
Life Science Alliance Sep 2021, 4 (12) e202101167; DOI: 10.26508/lsa.202101167

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Mining interactions with OrtSuite
João Pedro Saraiva, Alexandre Bartholomäus, René Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, Carsten Vogt, Antonis Chatzinotas, Peter Stadler, Oscar Dias, Ulisses Nunes da Rocha
Life Science Alliance Sep 2021, 4 (12) e202101167; DOI: 10.26508/lsa.202101167
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Volume 4, No. 12
December 2021
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  • Ecology
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