OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes

João Pedro Saraiva; Alexandre Bartholomäus; René Kallies; Marta Gomes; Marcos Bicalho; Jonas Coelho Kasmanas; Carsten Vogt; Antonis Chatzinotas; Peter Stadler; Oscar Dias; Ulisses Nunes da Rocha

doi:10.26508/lsa.202101167

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OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes

View ORCID ProfileJoão Pedro Saraiva, View ORCID ProfileAlexandre Bartholomäus, View ORCID ProfileRené Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, View ORCID ProfileCarsten Vogt, Antonis Chatzinotas, View ORCID ProfilePeter Stadler, Oscar Dias, View ORCID ProfileUlisses Nunes da Rocha Correspondence email

João Pedro Saraiva

1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany

Roles: Data curation, Software, Formal analysis, Validation, Visualization, Writing—original draft, review, and editing

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ORCID record for João Pedro Saraiva

Alexandre Bartholomäus

2GFZ German Research Centre for Geosciences, Section Geomicrobiology, Potsdam, Germany

Roles: Data curation, Software, Validation, Visualization, Methodology, Writing—review and editing

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ORCID record for Alexandre Bartholomäus

René Kallies

1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany

Roles: Resources, Methodology, Writing—review and editing

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ORCID record for René Kallies

Marta Gomes

3Centre of Biological Engineering, University of Minho, Braga, Portugal

Roles: Formal analysis, Validation, Methodology

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Marcos Bicalho

1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany

Roles: Software, Validation

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Jonas Coelho Kasmanas

1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany

4Institute of Mathematics and Computer Sciences, University of Sao Paulo, Sao Carlos, Brazil

7Department of Computer Science, Bioinformatics Group, Interdisciplinary Center for Bioinformatics, and Competence Center for Scalable Data Services and Solutions Dresden/Leipzig, University of Leipzig, Leipzig, Germany

Roles: Software, Formal analysis, Writing—review and editing

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Carsten Vogt

1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany

Roles: Data curation, Writing—original draft, review, and editing

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ORCID record for Carsten Vogt

Antonis Chatzinotas

1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany

5Institute of Biology, Leipzig University, Leipzig, Germany

6German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐Leipzig, Leipzig, Germany

Roles: Resources, Writing—review and editing

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Peter Stadler

8Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany

9Institute for Theoretical Chemistry, University of Vienna, Wien, Austria

10Facultad de Ciencias, Universidad Nacional de Colombia, Bogotá, Colombia

11Santa Fe Institute, Santa Fe, NM, USA

Roles: Methodology, Writing—review and editing

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Oscar Dias

3Centre of Biological Engineering, University of Minho, Braga, Portugal

Roles: Conceptualization, Writing—review and editing

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Ulisses Nunes da Rocha

1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany

Roles: Conceptualization, Resources, Software, Supervision, Funding acquisition, Investigation, Methodology, Project administration, Writing—original draft, review, and editing

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ORCID record for Ulisses Nunes da Rocha
For correspondence: ulisses.rocha@ufz.de

Published 27 September 2021. DOI: 10.26508/lsa.202101167

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Mining interactions with OrtSuite

João Pedro Saraiva, Alexandre Bartholomäus, René Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, Carsten Vogt, Antonis Chatzinotas, Peter Stadler, Oscar Dias, Ulisses Nunes da Rocha

Life Science Alliance Sep 2021, 4 (12) e202101167; DOI: 10.26508/lsa.202101167

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Mining interactions with OrtSuite

João Pedro Saraiva, Alexandre Bartholomäus, René Kallies, Marta Gomes, Marcos Bicalho, Jonas Coelho Kasmanas, Carsten Vogt, Antonis Chatzinotas, Peter Stadler, Oscar Dias, Ulisses Nunes da Rocha

Life Science Alliance Sep 2021, 4 (12) e202101167; DOI: 10.26508/lsa.202101167

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