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Table of Contents

June 2018 | Volume 1, No. 3

Research Articles

  • Discovery of a cofactor-independent inhibitor of <em>Mycobacterium tuberculosis</em> InhA
    Open Access
    Discovery of a cofactor-independent inhibitor of Mycobacterium tuberculosis InhA

    Yi Xia, Yasheen Zhou, David S Carter, Matthew B McNeil, Wai Choi, Jason Halladay, Pamela W Berry, Weimin Mao, Vincent Hernandez, Theresa O'Malley, Aaron Korkegian, Bjorn Sunde, Lindsay Flint, Lisa K Woolhiser, Michael S Scherman, Veronica Gruppo, Courtney Hastings, Gregory T Robertson, Thomas R Ioerger, Jim Sacchettini, Peter J Tonge, Anne J Lenaerts, Tanya Parish, MRK Alley

    Yi Xia ... MRK Alley

    Published 1 June 2018

    AN12855 is a novel cofactor-independent inhibitor of Mycobacterium tuberculosis InhA. AN12855 has potent activity against M. tuberculosis, good oral bioavailability, and comparable efficacy to isoniazid in infection models.

  • ERα activity depends on interaction and target site corecruitment with phosphorylated CREB1
    Open Access
    ERα activity depends on interaction and target site corecruitment with phosphorylated CREB1

    Melissa Berto, Valerie Jean, Wilbert Zwart, Didier Picard

    Melissa Berto ... Didier Picard

    Published 7 June 2018

    CREB1 interacts with, stimulates, and is necessary for estrogen receptor α activation by estrogen or cAMP signaling, and this cooperation may underlie their anti-apoptotic activities in breast cancer cells.

  • Transcriptional repression by FACT is linked to regulation of chromatin accessibility at the promoter of ES cells
    Open Access
    Transcriptional repression by FACT is linked to regulation of chromatin accessibility at the promoter of ES cells

    Constantine Mylonas, Peter Tessarz

    Constantine Mylonas ... Peter Tessarz

    Published 13 June 2018

    Depletion of FACT in murine embryonic stem cells show mild changes on the nucleosomal landscape but widespread changes in the transcriptome, faster proliferation, and neuronal differentiation rates.

  • Neuronal Aβ42 is enriched in small vesicles at the presynaptic side of synapses
    Open Access
    Neuronal Aβ42 is enriched in small vesicles at the presynaptic side of synapses

    Yang Yu, Daniel C Jans, Bengt Winblad, Lars O Tjernberg, Sophia Schedin-Weiss

    Yang Yu ... Sophia Schedin-Weiss

    Published 14 June 2018

    Super-resolution microscopy reveals that Aβ42 is mainly present at the presynaptic side of the synapse.

  • Ribosome recycling is coordinated by processive events in two asymmetric ATP sites of ABCE1
    Open Access
    Ribosome recycling is coordinated by processive events in two asymmetric ATP sites of ABCE1

    Elina Nürenberg-Goloub, Holger Heinemann, Milan Gerovac, Robert Tampé

    Elina Nürenberg-Goloub ... Robert Tampé

    Published 14 June 2018

    The stepwise ribosome disassembly in the translation cycle of eukaryotes and archaea is scheduled by discrete molecular events within the asymmetric ribosome recycling factor ABCE1.

  • Co-existing feedback loops generate tissue-specific circadian rhythms
    Open Access
    Co-existing feedback loops generate tissue-specific circadian rhythms

    J Patrick Pett, Matthew Kondoff, Grigory Bordyugov, Achim Kramer, Hanspeter Herzel

    J Patrick Pett ... Hanspeter Herzel

    Published 14 June 2018

    The analysis of tissue-specific data-based models of the gene regulatory network of the mammalian circadian clock reveals organ-specific synergies of feedback loops.

  • DHX15 regulates CMTR1-dependent gene expression and cell proliferation
    Open Access
    DHX15 regulates CMTR1-dependent gene expression and cell proliferation

    Francisco Inesta-Vaquera, Viduth K Chaugule, Alison Galloway, Laurel Chandler, Alejandro Rojas-Fernandez, Simone Weidlich, Mark Peggie, Victoria H Cowling

    Francisco Inesta-Vaquera ... Victoria H Cowling

    Published 18 June 2018

    DHX15 helicase regulates CMTR1-dependent first transcribed nucleotide ribose O-2 methylation.

  • Chronic platelet-derived growth factor receptor signaling exerts control over initiation of protein translation in glioma
    Open Access
    Chronic platelet-derived growth factor receptor signaling exerts control over initiation of protein translation in glioma

    Shuang Zhou, Vicky A Appleman, Christopher M Rose, Hyun Jung Jun, Juechen Yang, Yue Zhou, Roderick T Bronson, Steve P Gygi, Al Charest

    Shuang Zhou ... Al Charest

    Published 19 June 2018

    Using phospho-proteomics in a new model of malignant glioma, we reveal that clinically relevant, chronic PDGFRα signaling differs considerably from acute receptor stimulation and unveils previously unrecognized control over key elements of the translation initiation machinery.

  • Recruitment of ubiquitin-activating enzyme UBA1 to DNA by poly(ADP-ribose) promotes ATR signalling
    Open Access
    Recruitment of ubiquitin-activating enzyme UBA1 to DNA by poly(ADP-ribose) promotes ATR signalling

    Ramhari Kumbhar, Sophie Vidal-Eychenié, Dimitrios-Georgios Kontopoulos, Marion Larroque, Christian Larroque, Jihane Basbous, Sofia Kossida, Cyril Ribeyre, Angelos Constantinou

    Ramhari Kumbhar ... Angelos Constantinou

    Published 21 June 2018

    Human but not yeast UBA1 binds poly(ADP-ribose) polymers via a solvent-exposed and positively charged patch. Poly(ADP-ribose) polymerase 1–dependent recruitment of UBA1 to DNA ensures ataxia-telangiectasia and RAD3-related activation.

  • Somatic role of SYCE2: an insulator that dissociates HP1α from H3K9me3 and potentiates DNA repair
    Open Access
    Somatic role of SYCE2: an insulator that dissociates HP1α from H3K9me3 and potentiates DNA repair

    Noriko Hosoya, Masato Ono, Kiyoshi Miyagawa

    Noriko Hosoya ... Kiyoshi Miyagawa

    Published 22 June 2018

    This study reveals that the synaptonemal complex protein SYCE2 potentiates ataxia telangiectasia mutated–mediated DNA double-strand break repair by dissociating HP1α from trimethylated histone H3 lysine 9 in somatic cells.

  • Molecular analysis of human Ero1 reveals novel regulatory mechanisms for oxidative protein folding
    Open Access
    Molecular analysis of human Ero1 reveals novel regulatory mechanisms for oxidative protein folding

    Antti Moilanen, Kati Korhonen, Mirva J Saaranen, Lloyd W Ruddock

    Antti Moilanen ... Lloyd W Ruddock

    Published 26 June 2018

    This study reveals novel regulatory mechanisms for human Ero1α and Ero1β, including cooperativity for oxygen binding and complex formation with PDI via a novel mixed disulfide linkage.

  • DNA polymerase ζ deficiency causes impaired wound healing and stress-induced skin pigmentation
    Open Access
    DNA polymerase ζ deficiency causes impaired wound healing and stress-induced skin pigmentation

    Sabine S Lange, Sarita Bhetawal, Shelley Reh, Katherine Leslie Powell, Donna F Kusewitt, Richard D Wood

    Sabine S Lange ... Richard D Wood

    Published 29 June 2018

    Mice harboring DNA polymerase ζ–defective keratinocytes are shown to have a defect in wound healing and a striking p53-dependent migration of melanocytes to the skin following UV radiation or wounding.

Methods

  • Silica-based solid-phase extraction of cross-linked nucleic acid–bound proteins
    Open Access
    Silica-based solid-phase extraction of cross-linked nucleic acid–bound proteins

    Claudio Asencio, Aindrila Chatterjee, Matthias W Hentze

    Claudio Asencio ... Matthias W Hentze

    Published 18 June 2018

    The 2C method allows the rapid and straightforward isolation of nucleic acid–protein complexes, greatly simplifying downstream applications for the study of DNA– and RNA–protein interactions.

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Volume 1, No. 3
June 2018
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