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Cancer

  • Tumor-intrinsic response to IFNγ shapes the tumor microenvironment and anti–PD-1 response in NSCLC
    Open Access
    Tumor-intrinsic response to IFNγ shapes the tumor microenvironment and anti–PD-1 response in NSCLC

    Bonnie L Bullock, Abigail K Kimball, Joanna M Poczobutt, Alexander J Neuwelt, Howard Y Li, Amber M Johnson, Jeff W Kwak, Emily K Kleczko, Rachael E Kaspar, Emily K Wagner, Katharina Hopp, Erin L Schenk, Mary CM Weiser-Evans, Eric T Clambey, Raphael A Nemenoff

    Bonnie L Bullock ... Raphael A Nemenoff

    Published 27 May 2019

    Using an immunocompetent mouse model of NSCLC, this study demonstrates that tumor-intrinsic response to IFNγ determines response to anti–PD-1 through alterations in the tumor microenvironment.

  • A network of human functional gene interactions from knockout fitness screens in cancer cells
    Open Access
    A network of human functional gene interactions from knockout fitness screens in cancer cells

    Eiru Kim, Merve Dede, Walter F Lenoir, Gang Wang, Sanjana Srinivasan, Medina Colic, Traver Hart

    Eiru Kim ... Traver Hart

    Published 12 April 2019

    The function of human genes can be strongly inferred from their knockout fitness profiles across hundreds of CRISPR screens, illuminating the modular organization of the cell.

  • The PI3K and MAPK/p38 pathways control stress granule assembly in a hierarchical manner
    Open Access
    The PI3K and MAPK/p38 pathways control stress granule assembly in a hierarchical manner

    Alexander Martin Heberle, Patricia Razquin Navas, Miriam Langelaar-Makkinje, Katharina Kasack, Ahmed Sadik, Erik Faessler, Udo Hahn, Philip Marx-Stoelting, Christiane A Opitz, Christine Sers, Ines Heiland, Sascha Schäuble, Kathrin Thedieck

    Alexander Martin Heberle ... Kathrin Thedieck

    Published 28 March 2019

    PI3K and p38 act in a hierarchical manner to enhance mTORC1 activity and stress granule formation; although PI3K is the main driver, the impact of p38 gets apparent as PI3K activity declines.

  • Gene editing enables T-cell engineering to redirect antigen specificity for potent tumor rejection
    Open Access
    Gene editing enables T-cell engineering to redirect antigen specificity for potent tumor rejection

    Julian J Albers, Tim Ammon, Dario Gosmann, Stefan Audehm, Silvia Thoene, Christof Winter, Ramona Secci, Anja Wolf, Anja Stelzl, Katja Steiger, Jürgen Ruland, Florian Bassermann, Christian Kupatt, Martina Anton, Angela M Krackhardt

    Julian J Albers ... Angela M Krackhardt

    Published 15 March 2019

    Targeted integration of a tumor-reactive T-cell receptor into the TRAC locus using CRISPR-Cas9 and AAV6 redirects primary human T cells against tumor cells in vitro and in vivo.

  • Dependence on Myb expression is attenuated in myeloid leukaemia with N-terminal CEBPA mutations
    Open Access
    Dependence on Myb expression is attenuated in myeloid leukaemia with N-terminal CEBPA mutations

    Giacomo Volpe, Pierre Cauchy, David S Walton, Carl Ward, Daniel Blakemore, Rachael Bayley, Mary L Clarke, Luisa Schmidt, Claus Nerlov, Paloma Garcia, Stéphanie Dumon, Florian Grebien, Jon Frampton

    Giacomo Volpe ... Jon Frampton

    Published 15 March 2019

    We show that for acute myeloid leukaemias with CEBPA mutations, the dependency of leukaemia growth and differentiation on the Myb transcription factor is related to the combination of N- and C-terminal mutations involved and how this affects overall gene expression.

  • <em>PISD</em> is a mitochondrial disease gene causing skeletal dysplasia, cataracts, and white matter changes
    Open Access
    PISD is a mitochondrial disease gene causing skeletal dysplasia, cataracts, and white matter changes

    Tian Zhao, Caitlin M Goedhart, Pingdewinde N Sam, Rasha Sabouny, Susanne Lingrell, Adam J Cornish, Ryan E Lamont, Francois P Bernier, David Sinasac, Jillian S Parboosingh, Care4Rare Canada Consortium, Jean E Vance, Steven M Claypool, A Micheil Innes, Timothy E Shutt

    Tian Zhao ... Timothy E Shutt

    Published 11 March 2019

    This work demonstrates that pathogenic variants in PISD cause mitochondrial disease and suggests a novel mechanistic link whereby impaired lipid content in the inner mitochondrial membrane alters the activity of inner mitochondrial membrane proteases.

  • Innate extracellular vesicles from melanoma patients suppress β-catenin in tumor cells by miRNA-34a
    Open Access
    Innate extracellular vesicles from melanoma patients suppress β-catenin in tumor cells by miRNA-34a

    Jung-Hyun Lee, Jochen Dindorf, Martin Eberhardt, Xin Lai, Christian Ostalecki, Nina Koliha, Stefani Gross, Katja Blume, Heiko Bruns, Stefan Wild, Gerold Schuler, Julio Vera, Andreas S Baur

    Jung-Hyun Lee ... Andreas S Baur

    Published 7 March 2019

    Operated cancer patients develop elevated levels of extracellular vesicles (EVs) in their blood stream, suppressing cancer cells through miRNA-34a.

  • Optimized ChIP-seq method facilitates transcription factor profiling in human tumors
    Open Access
    Optimized ChIP-seq method facilitates transcription factor profiling in human tumors

    Abhishek A Singh, Karianne Schuurman, Ekaterina Nevedomskaya, Suzan Stelloo, Simon Linder, Marjolein Droog, Yongsoo Kim, Joyce Sanders, Henk van der Poel, Andries M Bergman, Lodewyk FA Wessels, Wilbert Zwart

    Abhishek A Singh ... Wilbert Zwart

    Published 28 December 2018

    This study presents an optimized ChIP-seq protocol to enhance transcription factor profiling in human tumours, enabling the analysis of highly challenging samples, including core needle biopsies.

  • A C/EBPα–Wnt connection in gut homeostasis and carcinogenesis
    Open Access
    A C/EBPα–Wnt connection in gut homeostasis and carcinogenesis

    Julian Heuberger, Undine Hill, Susann Förster, Karin Zimmermann, Victoria Malchin, Anja A Kühl, Ulrike Stein, Michael Vieth, Walter Birchmeier, Achim Leutz

    Julian Heuberger ... Achim Leutz

    Published 26 December 2018

    This research reveals an antagonism between C/EBPα expression and activated Wnt signaling in the human and mouse gut and suggests a tumor suppressor function of C/EBPα in human and murine intestinal cancer.

  • Disruption of stromal hedgehog signaling initiates RNF5-mediated proteasomal degradation of PTEN and accelerates pancreatic tumor growth
    Open Access
    Disruption of stromal hedgehog signaling initiates RNF5-mediated proteasomal degradation of PTEN and accelerates pancreatic tumor growth

    Jason R Pitarresi, Xin Liu, Alex Avendano, Katie A Thies, Gina M Sizemore, Anisha M Hammer, Blake E Hildreth, David J Wang, Sarah A Steck, Sydney Donohue, Maria C Cuitiño, Raleigh D Kladney, Thomas A Mace, Jonathan J Chang, Christina S Ennis, Huiqing Li, Roger H Reeves, Seth Blackshaw, Jianying Zhang, Lianbo Yu, Soledad A Fernandez, Wendy L Frankel, Mark Bloomston, Thomas J Rosol, Gregory B Lesinski, Stephen F Konieczny, Denis C Guttridge, Anil K Rustgi, Gustavo Leone, Jonathan W Song, Jinghai Wu, Michael C Ostrowski

    Jason R Pitarresi ... Michael C Ostrowski

    Published 26 October 2018

    Disrupting paracrine Hedgehog signaling in pancreatic cancer stroma through genetic deletion of fibroblast Smoothened leads to proteasomal degradation of fibroblast PTEN and accelerates tumor growth.

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